Evidence map›Paper›PMID 40371945›Full record

ReviewThe Plant cell2025

Lost in translation: What we have learned from attributes that do not translate from Arabidopsis to other plants.

Adrienne H K Roeder, Andrew Bent, John T Lovell, John K McKay, Armando Bravo, Karina Medina-Jimenez, Kevin W Morimoto, Siobhán M Brady, Lei Hua, Julian M Hibberd and 6 more

Abstract readReview
In one paragraph

Review in The Plant cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. The Promise of Synthetic Biology for Redesigning Plant Architecture.International journal of molecular sciences · 2026
    Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Adrienne H K RoederWeill Institute for Cell and Molecular Biology and School of Integrative Plant Science, Section of Plant Biology, Cornell University, 239 Weill Hall, 526 Campus Rd., Ithaca, NY 14853, USA.ORCID 0000-0001-6685-2984
Andrew BentDepartment of Plant Pathology, University of Wisconsin-Madison, Madison, WI 53706, USA.ORCID 0000-0001-6610-9525
John T LovellGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.ORCID 0000-0002-8938-1166
John K McKayDepartment of Soil and Crop Sciences, Colorado State University, Ft. Collins, CO 80523, USA.ORCID 0000-0003-4311-5513
Armando BravoDonald Danforth Plant Science Center, St. Louis, MO 63132, USA.ORCID 0000-0003-3869-045X
Karina Medina-JimenezDonald Danforth Plant Science Center, St. Louis, MO 63132, USA.ORCID 0000-0002-4305-7854
Kevin W MorimotoHoward Hughes Medical Institute, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0002-9690-0411
Siobhán M BradyHoward Hughes Medical Institute, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0001-9424-8055
Lei HuaDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.ORCID 0000-0002-8452-536X
Julian M HibberdDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.ORCID 0000-0003-0662-7958
Silin ZhongThe State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, P.R. China.ORCID 0000-0002-0198-7383
Francesca CardinalePlantStressLab, Department of Agricultural, Forest and Food Sciences, University of Turin, Grugliasco, TO 10095, Italy.ORCID 0000-0001-9892-9325
Ivan VisentinPlantStressLab, Department of Agricultural, Forest and Food Sciences, University of Turin, Grugliasco, TO 10095, Italy.ORCID 0000-0002-5803-9034
Claudio LovisoloPlantStressLab, Department of Agricultural, Forest and Food Sciences, University of Turin, Grugliasco, TO 10095, Italy.ORCID 0000-0001-8825-2904
Matthew A HannahBASF, BASF Belgium Coordination Center CommV, Technologiepark 101, 9052 Gent, Belgium.ORCID 0000-0002-4889-490X
Alex A R WebbDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.ORCID 0000-0003-0261-4375

Funding

BBSRC BB/K011790/1BBSRC BB/M011194/1BBSRC BB/M015416/1BBSRC BB/W001209/1
6 · The paper itself

Abstract

Research in Arabidopsis thaliana has a powerful influence on our understanding of gene functions and pathways. However, not everything translates from Arabidopsis to crops and other plants. Here, a group of experts consider instances where translation has been lost and why such translation is not possible or is challenging. First, despite great efforts, floral dip transformation has not succeeded in other species outside Brassicaceae. Second, due to gene duplications and losses throughout evolution, it can be complex to establish which genes are orthologs of Arabidopsis genes. Third, during evolution Arabidopsis has lost arbuscular mycorrhizal symbiosis. Fourth, other plants have evolved specialized cell types that are not present in Arabidopsis. Fifth, similarly, C4 photosynthesis cannot be studied in Arabidopsis, which is a C3 plant. Sixth, many other plant species have larger genomes, which has given rise to innovations in transcriptional regulation that are not present in Arabidopsis. Seventh, phenotypes such as acclimation to water stress can be challenging to translate due to different measurement strategies. And eighth, while the circadian oscillator is conserved, there are important nuances in the roles of circadian regulators in crop plants. A key theme emerging across these vignettes is that even when translation is lost, insights can still be gained through comparison with Arabidopsis.

Indexed as

ArabidopsisProtein BiosynthesisGene Expression Regulation, Plant

Identifiers

PMID40371945
PMCPMC12079428

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.