Evidence map›Paper›PMID 40368925›Full record

ArticleNature communications2025

Hierarchical glycolytic pathways control the carbohydrate utilization regulator in human gut Bacteroides.

Seth G Kabonick, Kamalesh Verma, Jennifer L Modesto, Victoria H Pearce, Kailyn M Winokur, Eduardo A Groisman, Guy E Townsend

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. A conserved peptidase governs glucose homeostasis inbioRxiv : the preprint server for biology · 2026
    Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Seth G KabonickPenn State College of Medicine, Hershey, PA, USA.ORCID http://orcid.org/0000-0003-4539-232X
Kamalesh VermaPenn State College of Medicine, Hershey, PA, USA.ORCID http://orcid.org/0000-0002-2230-3817
Jennifer L ModestoPenn State College of Medicine, Hershey, PA, USA.ORCID http://orcid.org/0009-0005-3435-6894
Victoria H PearcePenn State College of Medicine, Hershey, PA, USA.ORCID http://orcid.org/0000-0002-7599-4076
Kailyn M WinokurPenn State College of Medicine, Hershey, PA, USA.ORCID http://orcid.org/0009-0001-4961-0649
Eduardo A GroismanYale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-6860-7691
Guy E TownsendPenn State College of Medicine, Hershey, PA, USA. gtownsend@pennstatehealth.psu.edu.ORCID http://orcid.org/0000-0002-8231-3769

Funding

Control of gut colonization by the prominent gut bacterium Bacteroides thetaiotaomicronR01GM123798 · NIGMS · YALE UNIVERSITY · PI GROISMAN, EDUARDO · 2018 to 2025
$2.7M
Elucidating the consequences of dietary sugar consumption on the gut microbiotaR01DK132711 · NIDDK · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Guy Edmund Townsend · 2023 to 2026
$2.2M
Harnessing the gut microbiome to detect and quantify glycansR01GM147178 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI TOWNSEND, GUY EDMUND · 2022 to 2025
$1.8M
NIDDK NIH HHS R01 DK132711NIGMS NIH HHS R01 GM123798NIGMS NIH HHS R01 GM147178U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) DK132711U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM123798U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM147178
6 · The paper itself

Abstract

Human dietary choices control the gut microbiome. Industrialized populations consume abundant amounts of glucose and fructose, resulting in microbe-dependent intestinal disorders. Simple sugars inhibit the carbohydrate utilization regulator (Cur), a transcription factor in members of the prominent gut bacterial phylum, Bacteroidetes. Cur controls products necessary for carbohydrate utilization, host immunomodulation, and intestinal colonization. Here, we demonstrate how simple sugars decrease Cur activity in the mammalian gut. Our findings in two Bacteroides species show that ATP-dependent fructose-1,6-bisphosphate (FBP) synthesis is necessary for glucose or fructose to inhibit Cur, but dispensable for growth because of an essential pyrophosphate (PPi)-dependent enzyme. Furthermore, we show that ATP-dependent FBP synthesis is required to regulate Cur in the gut but does not contribute to fitness when cur is absent, indicating PPi is sufficient to drive glycolysis in these bacteria. Our findings reveal how sugar-rich diets inhibit Cur, thereby disrupting Bacteroides fitness and diminishing products that are beneficial to the host.

Indexed as

Bacterial ProteinsBacteroidesGastrointestinal MicrobiomeGlycolysisAdenosine TriphosphateAnimalsCarbohydrate MetabolismDiphosphatesFructoseGene Expression Regulation, BacterialGlucoseHumansMiceAdenosine TriphosphateBacterial ProteinsDiphosphatesFructoseGlucose

Identifiers

PMID40368925
PMCPMC12078602

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.