Evidence map›Paper›PMID 40367183›Full record

ArticleScience advances2025

Interaction networks of SIM-binding groove mutants reveal alternate modes of SUMO binding and profound impact on SUMO conjugation.

Laura A Claessens, Matty Verlaan-de Vries, Nienke Broekman, Martijn S Luijsterburg, Alfred C O Vertegaal

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Laura A ClaessensDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, Netherlands.ORCID 0000-0001-7075-5087
Matty Verlaan-de VriesDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, Netherlands.ORCID 0000-0001-9785-8510
Nienke BroekmanDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, Netherlands.
Martijn S LuijsterburgDepartment of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.ORCID 0000-0001-5796-6541
Alfred C O VertegaalDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, Netherlands.ORCID 0000-0002-7989-0493

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The best-characterized mode of noncovalent SUMO interaction involves binding of a SUMO-interaction motif (SIM) to a conserved binding groove in SUMO. Our knowledge on other types of SUMO interactions is still limited. Using SIM-binding groove SUMO2/3 mutants and mass spectrometry, we identified proteins that bind to SUMO in an alternate manner. Domain-enrichment analysis characterized a group of WD40 repeat domain-containing proteins as SIM-independent SUMO interactors, and we validated direct binding of SEC13 and SEH1L to SUMO in vitro

Indexed as

MutationProtein Interaction MapsSmall Ubiquitin-Related Modifier ProteinsBinding SitesHumansModels, MolecularProtein BindingProtein Interaction Domains and MotifsSumoylationSmall Ubiquitin-Related Modifier ProteinsSUMO2 protein, human

Identifiers

PMID40367183
PMCPMC12077520

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.