Evidence map›Paper›PMID 40367125›Full record

ArticlePloS one2025

New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application.

Dylan G E Gomes, Joseph R Benjamin, Benjamin J Clemens, Ralph Lampman, Jason B Dunham

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dylan G E GomesUnited States Geological Survey, Forest and Rangeland Ecosystem Science Center, Seattle, Washington, United States of America.ORCID https://orcid.org/0000-0002-2642-3728
Joseph R BenjaminUnited States Geological Survey, Forest and Rangeland Ecosystem Science Center, Boise, Idaho, United States of America.ORCID https://orcid.org/0000-0003-3733-6838
Benjamin J ClemensOregon Department of Fish and Wildlife, Corvallis Research Lab, Corvallis, Oregon, United States of America.
Ralph LampmanYakama Nation Fisheries Resource Management Program, Toppenish, Washington, United States of America.ORCID https://orcid.org/0000-0002-7532-3504
Jason B DunhamUnited States Geological Survey, Forest and Rangeland Ecosystem Science Center, Corvallis, Oregon, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lampreys (Petromyzontiformes) are an ancient group of fishes with complex life histories. We created a life cycle model that includes an R Shiny interactive web application interface to simulate abundance by life stage. This will allow scientists and managers to connect available demographic information in a framework that can be applied to questions regarding lamprey biology and conservation. We used Pacific lamprey (Entosphenus tridentatus) as a case study to highlight the utility of this model. We applied a global sensitivity analysis to explore the importance of individual life stage parameters to overall population size, and to better understand the implications of existing gaps in knowledge. We also provided example analyses of selected management scenarios (dam passage, fish translocations, and hatchery additions) influencing Pacific lamprey in fresh water. These applications illustrate how the model can be applied to inform conservation efforts. This tool will provide new capabilities for users to explore their own questions about lamprey biology and conservation. Simulations can hone hypotheses and predictions, which can then be empirically tested in the real world.

Indexed as

LampreysLife Cycle StagesModels, BiologicalSoftwareAnimalsConservation of Natural Resources

Identifiers

PMID40367125
PMCPMC12077736

What OpenQuestion holds

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LicenceCC0
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.