Evidence map›Paper›PMID 40365812›Full record

ArticleJournal of experimental botany2025

Quantitative genetics of photosynthetic trait variation in maize.

Waqar Ali, Marcin Grzybowski, J Vladimir Torres-Rodríguez, Fangyi Li, Nikee Shrestha, Ramesh Kanna Mathivanan, Gabriel de Bernardeaux, Khang Hoang, Ravi V Mural, Rebecca L Roston and 2 more

Abstract read
In one paragraph

Article in Journal of experimental botany, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
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  4. Review
  5. Hybrids reveal accessible chromatinbioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Waqar AliDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID 0009-0001-8822-0950
Marcin GrzybowskiDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID 0000-0002-6303-5433
J Vladimir Torres-RodríguezDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID 0000-0001-6056-3452
Fangyi LiDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID 0009-0008-2473-104X
Nikee ShresthaDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID 0000-0003-4195-7549
Ramesh Kanna MathivananDepartment of Horticultural Sciences, Texas A and M University, College Station, TX, USA.ORCID 0009-0008-6256-2865
Gabriel de BernardeauxCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID 0009-0004-2166-5930
Khang HoangCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID 0009-0005-3207-3591
Ravi V MuralDepartment of Agronomy, Horticulture & Plant Science, Brookings, SD 57007, USA.ORCID 0000-0002-5489-9918
Rebecca L RostonCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID 0000-0002-3063-5002
James C SchnableDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID 0000-0001-6739-5527
Seema SahayCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID 0000-0001-5707-2206

Funding

Foundation for Food and Agriculture 602757Higher Education Commission of PakistanUniversity of Nebraska-LincolnUNL Wheat Innovation Fund
6 · The paper itself

Abstract

Natural genetic variation in photosynthesis-related traits can help both to identify genes involved in regulating photosynthetic processes and to develop crops with improved productivity and photosynthetic efficiency. However, rapidly fluctuating environmental parameters create challenges for measuring photosynthetic parameters in large populations under field conditions. We measured chlorophyll fluorescence and absorbance-based photosynthetic traits in a maize diversity panel in the field using an experimental design that allowed us to estimate and control multiple confounding factors. Controlling the impact of day of measurement and light intensity as well as patterns of two-dimensional spatial variation in the field increased heritability for 11 out of 14 traits measured. We were able to identify high-confidence genome-wide association study (GWAS) signals associated with variation in four spatially corrected traits (the quantum yield of PSII, non-photochemical quenching, redox state of QA, and relative chlorophyll content). Insertion alleles for Arabidopsis orthologs of three candidate genes exhibited phenotypes consistent with our GWAS results. Collectively these results illustrate the potential of applying best practices from quantitative genetics research to address outstanding questions in plant physiology and to understand natural variation in photosynthesis.

Indexed as

Genetic VariationPhotosynthesisQuantitative Trait LociZea maysChlorophyllGenome-Wide Association StudyPhenotypeChlorophyllArabidopsis thalianamaizenatural variationphotosynthetic traitsquantitative geneticsspatial variation

Identifiers

PMID40365812
PMCPMC12448886

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.