Evidence map›Paper›PMID 40364428›Full record

ReviewPlants (Basel, Switzerland)2025

A Systematic Review of the Advances and New Insights into Copy Number Variations in Plant Genomes.

Saimire Silaiyiman, Jiaxuan Liu, Jiaxin Wu, Lejun Ouyang, Zheng Cao, Chao Shen

Abstract readReview
In one paragraph

Review in Plants (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Structural Variation and Its Roles in Plant Genomes.Plants (Basel, Switzerland) · 2026
    Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Saimire SilaiyimanGuangdong Provincial Key Laboratory for Green Agricultural Production and Intelligent Equipment, College of Biological and Food Engineering, Guangdong University of Petrochemical Technology, Maoming 525000, China.
Jiaxuan LiuGuangdong Provincial Key Laboratory for Green Agricultural Production and Intelligent Equipment, College of Biological and Food Engineering, Guangdong University of Petrochemical Technology, Maoming 525000, China.
Jiaxin WuGuangdong Provincial Key Laboratory for Green Agricultural Production and Intelligent Equipment, College of Biological and Food Engineering, Guangdong University of Petrochemical Technology, Maoming 525000, China.
Lejun OuyangGuangdong Provincial Key Laboratory for Green Agricultural Production and Intelligent Equipment, College of Biological and Food Engineering, Guangdong University of Petrochemical Technology, Maoming 525000, China.ORCID 0000-0001-8114-5540
Zheng CaoMaoming Agricultural Science and Technology Extension Center, Maoming 525000, China.
Chao ShenGuangdong Provincial Key Laboratory for Green Agricultural Production and Intelligent Equipment, College of Biological and Food Engineering, Guangdong University of Petrochemical Technology, Maoming 525000, China.ORCID 0000-0001-5483-3348

Funding

Guangdong Basic and Applied Basic Research Foundation 2019A1515110288Maoming Science and Technology Project 2021KJZXZJGSPDX006National Natural Science Foundation of China 32201873State Key Laboratory of Cotton Bio-breeding and Integrated Utilization Open Fund CB2024A21the Projects of Talents Recruitment of Guangdong University of Petrochemical Technology 2019rc112
6 · The paper itself

Abstract

Copy number variations (CNVs), as an important structural variant in genomes, are widely present in plants, affecting their phenotype and adaptability. In recent years, CNV research has not only focused on changes in gene copy numbers but has also been linked to complex mechanisms such as genome rearrangements, transposon activity, and environmental adaptation. The advancement in sequencing technologies has made the detection and analysis of CNVs more efficient, not only revealing their crucial roles in plant disease resistance, adaptability, and growth development, but also demonstrating broad application potential in crop improvement, particularly in selective breeding and genomic selection. By studying CNV changes during the domestication process, researchers have gradually recognized the important role of CNVs in plant domestication and evolution. This article reviews the formation mechanisms of CNVs in plants, methods for their detection, their relationship with plant traits, and their applications in crop improvement. It emphasizes future research directions involving the integration of multi-omics to provide new perspectives on the structure and function of plant genomes.

Indexed as

agronomic traitsartificial intelligencecopy number variationsgenetic improvementmulti-omics

Identifiers

PMID40364428
PMCPMC12073271

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.