Evidence map›Paper›PMID 40360525›Full record

ArticleScientific data2025

A haplotype-resolved genome assembly and gene expression map of Cushion willow.

Jindan Wang, Kaiyun Chen, Rengang Zhang, Yuan Huang, Jiahui Chen

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In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jindan WangCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, P. R. China.
Kaiyun ChenCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, P. R. China.
Rengang ZhangCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, P. R. China.ORCID http://orcid.org/0000-0002-8028-9208
Yuan HuangSchool of Life Sciences, Yunnan Normal University, Kunming, 650092, Yunnan, P. R. China. huangyuanynnu@aliyun.com.
Jiahui ChenCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, P. R. China. chenjh@mail.kib.ac.cn.ORCID http://orcid.org/0009-0006-2872-8185

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salix brachista, commonly known as Cushion willow, is a common component of subnival alpine assemblages and a dioecious or monoecious plant with a creeping stem and numerous lateral branches. Cushion willow takes cuttings more easier and has a specific sex system, making it a suitable system for studying the evolution of plant sex determination, adaptive evolution of alpine plants, and mining stress resistance gene resource that cope with the hostile alpine environment. Therefore, Cushion willow has potential value in genetic improvements for willows used as bioenergy crops, in gardening, and as ornamental plants. However, the genome of Cushion willow still contains some un-assembled repetitive sequences, and there is limited availability of a gene expression atlas, which hinders its potential use for the aforementioned purposes. Here, we updated the genome of Cushion willow to be haplotype-resolved and near telomere-to-telomere, and obtained a high-quality transcriptomic map. Our research provides a potential model species for alpine adaptive research, sex determination evolution studies, and improving willow crops.

Indexed as

Genome, PlantSalixTranscriptomeHaplotypes

Identifiers

PMID40360525
PMCPMC12075806

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.