Evidence map›Paper›PMID 40359052›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

TCP3 is a substrate of the COP1/SPA ubiquitin ligase to regulate anthocyanin accumulation and flowering time in

Ruiyan Tao, Ira Trivedi, Laura Trimborn, Jathish Ponnu, Blanka Violetta Tóth, Ute Hoecker

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ruiyan TaoInstitute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), Department of Biology, Biocenter, University of Cologne, Cologne 50674, Germany.ORCID 0000-0003-1072-1867
Ira TrivediInstitute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), Department of Biology, Biocenter, University of Cologne, Cologne 50674, Germany.ORCID 0009-0003-1726-9671
Laura TrimbornInstitute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), Department of Biology, Biocenter, University of Cologne, Cologne 50674, Germany.ORCID 0000-0002-0475-4585
Jathish PonnuInstitute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), Department of Biology, Biocenter, University of Cologne, Cologne 50674, Germany.ORCID 0000-0002-3276-7068
Blanka Violetta TóthInstitute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), Department of Biology, Biocenter, University of Cologne, Cologne 50674, Germany.ORCID 0009-0003-1009-2076
Ute HoeckerInstitute for Plant Sciences and Cluster of Excellence on Plant Sciences (CEPLAS), Department of Biology, Biocenter, University of Cologne, Cologne 50674, Germany.ORCID 0000-0002-5636-9777

Funding

Cluster of Excellence on Plant Sciences (CEPLAS) 390686111CSC | Chinese Government Scholarship CSC-DAADDeutsche Forschungsgemeinschaft (DFG) HO 2793/3-4
6 · The paper itself

Abstract

COP1 is a conserved ubiquitin ligase found in plants and animals. In plants, COP1 acts together with SPA proteins to suppress light signaling in darkness by promoting the degradation of transcription factors involved in photomorphogenesis. Substrates of this ubiquitin ligase share a Valine-Proline (VP) motif that interacts with the WD-repeat domain of COP1 in plants and humans. Here, we have identified the transcription factor TCP3 as a noncanonical substrate of COP1/SPA that lacks a VP motif. The TCP domain of TCP3 directly interacts with the WD-repeat domains of COP1 and SPA1. TCP3 requires the VP-binding cleft of COP1 for protein-protein interaction. We further show that the TCP3 protein is degraded in darkness and preferentially in short day through a COP1-dependent manner, while TCP3 is stabilized by red, far-red, blue light, and long day conditions. COP1/SPA-mediated degradation of TCP3 inhibits anthocyanin accumulation by reducing the expression of anthocyanin biosynthesis genes. COP1/SPA-mediated degradation of TCP3 is also important in regulating flowering time. Taken together, our results have identified a noncanonical substrate of the COP1/SPA ubiquitin ligase, thereby also uncovering TCPs as a transcription factor family that is targeted by COP1/SPA. Since the COP1/SPA-interacting TCP domain is conserved among TCPs, it is possible that other members of the TCP family-having divergent functions including cell fate determination and hormone signaling-are targets of COP1/SPA as well.

Indexed as

AnthocyaninsArabidopsisArabidopsis ProteinsCell Cycle ProteinsFlowersTranscription FactorsUbiquitin-Protein LigasesGene Expression Regulation, PlantAnthocyaninsArabidopsis ProteinsAT2G32950 protein, ArabidopsisCell Cycle ProteinsSPA1 protein, ArabidopsisTranscription FactorsUbiquitin-Protein LigasesCOP1/SPA complexflowering timeTCP3TCP transcription factor familyubiquitin ligase

Identifiers

PMID40359052
PMCPMC12107181

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.