Evidence map›Paper›PMID 40358390›Full record

ArticleCancer discovery2025

Human Papillomavirus Integration Induces Oncogenic Host Gene Fusions in Oropharyngeal Cancers.

Nusrat Khan, Keiko Akagi, Shiming Jiang, Joe Dan Dunn, Bo Jiang, Weihong Xiao, Madison P O'Hara, Li Shen, Qi Wang, Vakul Mohanty and 7 more

Abstract read
In one paragraph

Article in Cancer discovery, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Nusrat Khan *Department of Thoracic/Head and Neck Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-6676-7269
Keiko Akagi *Department of Thoracic/Head and Neck Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-5159-3403
Shiming JiangDepartment of Thoracic/Head and Neck Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0003-0303-4030
Joe Dan DunnDepartment of Thoracic/Head and Neck Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-5091-4527
Bo JiangDepartment of Thoracic/Head and Neck Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0001-8341-1750
Weihong XiaoDepartment of Thoracic/Head and Neck Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0003-4132-213X
Madison P O'HaraDepartment of Thoracic/Head and Neck Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0009-0009-2435-3410
Li ShenDepartment of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0001-8427-9448
Qi WangDepartment of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0003-0858-9393
Vakul MohantyDepartment of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-5536-6750
Jing WangDepartment of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-5398-0802
Sara GoodwinCold Spring Harbor Laboratory, Cold Spring Harbor, New York.ORCID 0000-0002-6110-7296
Jamie L HutchinsGuardant Health, Palo Alto, California.ORCID 0009-0002-2669-9537
Kevin R CoombesDepartment of Population Health Science, Medical College of Georgia, Augusta University, Augusta, Georgia.ORCID 0000-0002-7630-2123
Jagannadha K SastryDepartment of Thoracic/Head and Neck Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-6987-4422
David E SymerDepartment of Lymphoma and Myeloma, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-8945-6068
Maura L GillisonDepartment of Thoracic/Head and Neck Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-8145-5749

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DIANE BODURKA · 1985 to 2026
$290.8M
NovaSeq6000S10OD024977 · OD · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HUFF, VICKI · 2018 to 2018
$995k
The Development and Optimization of Long-Read Sequencing Applications to Cancer Genomics in a Core SettingR50CA243890 · NCI · COLD SPRING HARBOR LABORATORY · PI GOODWIN, SARA · 2019 to 2025
$920k
Cancer Prevention and Research Institute of Texas (CPRIT)NCI NIH HHS P30 CA016672NCI NIH HHS R50 CA243890NIH HHS S10 OD024977
6 · The paper itself

Abstract

Human papillomavirus (HPV) integration disrupts host genomic structure and expression, but whether these alterations promote cancer development remains unclear. Multiple genomic analyses of oropharyngeal cancers identified several host fusion genes, including recurrent FGFR3-TACC3 fusions, expressed from rearranged genomic loci adjacent to HPV integration sites. Evolutionary modeling pointed to integration of virus concatemers into the host genome as a common initiating event in fusion formation. Coexpression of HPV16 E6/E7 and FGFR3-TACC3, but neither alone, was sufficient for tumor development in both xenograft and syngeneic mouse models and led to unique transcriptional programs implicated in carcinogenesis. FGFR3-TACC3 expression decreased the ubiquitination and degradation of E6 and E7, thereby increasing oncoprotein abundance. We conclude that expression of HPV16 oncoproteins and host-gene fusions generated from HPV integration sites can be sufficient for cancer development. SIGNIFICANCE: Fusion genes are frequently cancer drivers, but the molecular mechanisms underlying their formation have remained unclear. In this study, we identified HPV integration as the instigator of genomic rearrangements that lead to the formation of FGFR3-TACC3 and other fusion genes. FGFR3-TACC3 expression decreased the ubiquitination and degradation of HPV E6 and E7, furthering the oncogenesis of HPV.

Indexed as

Human papillomavirus 16Oropharyngeal NeoplasmsPapillomavirus InfectionsVirus IntegrationAnimalsHuman Papillomavirus VirusesHumansMiceMicrotubule-Associated ProteinsOncogene Proteins, ViralPapillomavirus E7 ProteinsReceptor, Fibroblast Growth Factor, Type 3Repressor ProteinsUbiquitinationE6 protein, Human papillomavirus type 16FGFR3 protein, humanMicrotubule-Associated ProteinsOncogene Proteins, ViralPapillomavirus E7 ProteinsReceptor, Fibroblast Growth Factor, Type 3Repressor ProteinsTACC3 protein, human

Identifiers

PMID40358390
PMCPMC12315581

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.