Evidence map›Paper›PMID 40356278›Full record

ArticleMolecular plant pathology2025

Genomic Islands of Pseudomonas syringae pv. tabaci 6605: Identification of PtaGI-1 as a Pathogenicity Island With Effector Genes and a Tabtoxin Cluster.

Yuta Watanabe, Kotomi Kunishi, Hidenori Matsui, Nanami Sakata, Yoshiteru Noutoshi, Kazuhiro Toyoda, Yuki Ichinose

Abstract read
In one paragraph

Article in Molecular plant pathology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuta WatanabeThe Graduate School of Environmental, Life, Natural Science and Technology, Okayama University, Kita-ku, Okayama, Japan.
Kotomi KunishiFaculty of Agriculture, Okayama University, Kita-ku, Okayama, Japan.
Hidenori MatsuiThe Graduate School of Environmental, Life, Natural Science and Technology, Okayama University, Kita-ku, Okayama, Japan.ORCID 0000-0003-3386-7180
Nanami SakataThe Graduate School of Environmental, Life, Natural Science and Technology, Okayama University, Kita-ku, Okayama, Japan.
Yoshiteru NoutoshiThe Graduate School of Environmental, Life, Natural Science and Technology, Okayama University, Kita-ku, Okayama, Japan.ORCID 0000-0001-8140-3722
Kazuhiro ToyodaThe Graduate School of Environmental, Life, Natural Science and Technology, Okayama University, Kita-ku, Okayama, Japan.
Yuki IchinoseThe Graduate School of Environmental, Life, Natural Science and Technology, Okayama University, Kita-ku, Okayama, Japan.ORCID 0000-0002-7767-7912

Funding

Japan Society for the Promotion of Science 22H0234814
6 · The paper itself

Abstract

Genomic islands (GIs) are 20-500 kb DNA regions that are thought to be acquired by horizontal gene transfer. GIs that confer pathogenicity and environmental adaptation have been reported in Pseudomonas species; however, GIs that enhance bacterial virulence have not. Here, we identified 110 kb and 103 kb GIs in P. syringae pv. tabaci 6605 (Pta6605), the causative agent of tobacco wildfire disease, which has the ability to produce tabtoxin as a phytotoxin. These GIs are partially homologous to known genomic islands in Pseudomonas aeruginosa and P. syringae pv. phaseolicola and were designated PtaGI-1 and PtaGI-2. Both PtaGIs conserve core genes, whereas each GI possesses different accessory genes. PtaGI-1 contains a tabtoxin biosynthetic gene cluster and three type III effector genes among its accessory genes, whereas PtaGI-2 also contains homologous genes to hsvABC, pathogenicity-related genes in Erwinia amylovora. Inoculation revealed that the PtaGI-1 mutant, but not the PtaGI-2 mutant, lost the ability to biosynthesise tabtoxin and to cause disease. Therefore, PtaGI-1 is thought to be a pathogenicity island. Both PtaGI-1 and PtaGI-2 have a pseudogene of tRNA

Indexed as

Bacterial ToxinsGenomic IslandsMultigene FamilyPseudomonas syringaeGenes, BacterialMutationNicotianaPlant DiseasesVirulenceBacterial Toxinshorizontal gene transferintegrative and conjugative elementspathogenicity islandPseudomonas syringaetabtoxin

Identifiers

PMID40356278
PMCPMC12069800

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.