Evidence map›Paper›PMID 40354489›Full record

ArticlePLoS computational biology2025

Integrated mathematical and experimental modeling uncovers enhanced EMT plasticity upon loss of the DLC1 tumor suppressor.

Sebastian Höpfl, Merih Özverin, Helena Nowack, Raluca Tamas, Andrew G Clark, Nicole Radde, Monilola A Olayioye

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sebastian HöpflInstitute for Stochastics and Applications, University of Stuttgart, Stuttgart, Germany.ORCID 0000-0002-5300-0915
Merih ÖzverinInstitute of Cell Biology and Immunology, University of Stuttgart, Stuttgart, Germany.
Helena NowackInstitute of Cell Biology and Immunology, University of Stuttgart, Stuttgart, Germany.
Raluca TamasInstitute of Cell Biology and Immunology, University of Stuttgart, Stuttgart, Germany.ORCID 0009-0002-4814-1964
Andrew G ClarkStuttgart Research Center Systems Biology, University of Stuttgart, Stuttgart, Germany.ORCID 0000-0003-3712-4931
Nicole RaddeInstitute for Stochastics and Applications, University of Stuttgart, Stuttgart, Germany.ORCID 0000-0002-5145-0058
Monilola A OlayioyeStuttgart Research Center Systems Biology, University of Stuttgart, Stuttgart, Germany.ORCID 0000-0003-1093-263X

Funding

Baden-Württemberg Ministry of ScienceEuropean Union’s Horizon 2020 research and innovation programmeFederal Ministry of Education and Research (BMBF)German Research Foundation (DFG)
6 · The paper itself

Abstract

Epithelial-mesenchymal transition (EMT) plays an essential role in embryonic development, wound healing, and tumor progression. Partial EMT states have been linked to metastatic dissemination and drug resistance. Several interconnected feedback loops at the RNA and protein levels control the transition between different cellular states. Using a combination of mathematical modeling and experimental analyses in the TGFβ-responsive breast epithelial MCF10A cell model, we identify a central role for the tumor suppressor protein Deleted in Liver Cancer 1 (DLC1) during EMT. By extending a previous model of EMT comprising key transcription factors and microRNAs, our work shows that DLC1 acts as a positive regulator of TGFβ-driven EMT, mainly by promoting SNAIL1 expression. Our model predictions indicate that DLC1 loss impairs EMT progression. Experimental analyses confirm this prediction and reveal the acquisition of a partial EMT phenotype in DLC1-depleted cells. Furthermore, our model results indicate a possible EMT reversion to partial or epithelial states upon DLC1 loss in MCF10A cells induced toward mesenchymal phenotypes. The increased EMT plasticity of cells lacking DLC1 may explain its importance as a tumor suppressor.

Indexed as

Epithelial-Mesenchymal TransitionGTPase-Activating ProteinsModels, BiologicalTumor Suppressor ProteinsBreast NeoplasmsCell Line, TumorComputational BiologyEpithelial CellsFemaleHumansSnail Family Transcription FactorsTransforming Growth Factor betaDLC1 protein, humanGTPase-Activating ProteinsSnail Family Transcription FactorsTransforming Growth Factor betaTumor Suppressor Proteins

Identifiers

PMID40354489
PMCPMC12121911

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.