Evidence map›Paper›PMID 40353852›Full record

ArticleBioinformatics (Oxford, England)2025

VTX: real-time high-performance molecular structure and dynamics visualization software.

Maxime Maria, Simon Guionnière, Nicolas Dacquay, Cyprien Plateau-Holleville, Valentin Guillaume, Vincent Larroque, Jean Lardé, Yassine Naimi, Jean-Philip Piquemal, Guillaume Levieux and 3 more

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Maxime MariaXLIM, UMR CNRS 7252, Université de Limoges, 87000 Limoges, France.
Simon GuionnièreLaboratoire GBCM, EA 7528, Conservatoire National des Arts et Métiers, 75003 Paris, France.
Nicolas DacquayLaboratoire GBCM, EA 7528, Conservatoire National des Arts et Métiers, 75003 Paris, France.
Cyprien Plateau-HollevilleXLIM, UMR CNRS 7252, Université de Limoges, 87000 Limoges, France.
Valentin GuillaumeLaboratoire GBCM, EA 7528, Conservatoire National des Arts et Métiers, 75003 Paris, France.
Vincent LarroqueXLIM, UMR CNRS 7252, Université de Limoges, 87000 Limoges, France.
Jean LardéLaboratoire GBCM, EA 7528, Conservatoire National des Arts et Métiers, 75003 Paris, France.
Yassine NaimiQubit Pharmaceuticals SAS, 75014 Paris, France.
Jean-Philip PiquemalLCT, UMR 7616 CNRS, Sorbonne Université, 75005 Paris, France.
Guillaume LevieuxLaboratoire CEDRIC, EA 4626, Conservatoire National des Arts et Métiers, 75003 Paris, France.
Nathalie LagardeLaboratoire GBCM, EA 7528, Conservatoire National des Arts et Métiers, 75003 Paris, France.
Stéphane MérillouXLIM, UMR CNRS 7252, Université de Limoges, 87000 Limoges, France.
Matthieu MontesLaboratoire GBCM, EA 7528, Conservatoire National des Arts et Métiers, 75003 Paris, France.ORCID 0000-0001-5921-460X

Funding

European Research CouncilEuropean Union's Horizon 2020 research and innovation program 640283
6 · The paper itself

Abstract

summaryVTX is a molecular visualization software capable to handle most molecular structures and dynamics trajectories file formats. It features a real-time high-performance molecular graphics engine, based on modern OpenGL, optimized for the visualization of massive molecular systems and molecular dynamics trajectories. VTX includes multiple interactive camera and user interaction features, notably free-fly navigation and a fully modular graphical user interface designed for increased usability. It allows the production of high-resolution images for presentations and posters with custom background. VTX design is focused on performance and usability for research, teaching, and educative purposes. AVAILABILITY AND IMPLEMENTATION: VTX is open source and free for non-commercial use. Builds for Windows and Ubuntu Linux are available at http://vtx.drugdesign.fr. The source code is available at https://github.com/VTX-Molecular-Visualization.

Indexed as

Molecular Dynamics SimulationSoftwareComputer GraphicsMolecular StructureUser-Computer Interface

Identifiers

PMID40353852
PMCPMC12202049

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.