Evidence map›Paper›PMID 40353662›Full record

ArticleApplied and environmental microbiology2025

Mobilizable shuttle vectors with fluorescent markers functional across different species of bacteria.

Zackary R Armstrong, Janie Alonso, Venus Stanton, Nikhil Patel, Xhavit Zogaj, Sebastian S Cocioba, Karl E Klose

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zackary R ArmstrongSouth Texas Center for Emerging Infectious Diseases and Department of Molecular Microbiology and Immunology, University of Texas San Antonio, San Antonio, Texas, USA.ORCID 0009-0004-5521-2091
Janie AlonsoSouth Texas Center for Emerging Infectious Diseases and Department of Molecular Microbiology and Immunology, University of Texas San Antonio, San Antonio, Texas, USA.ORCID 0009-0003-9049-9326
Venus StantonSouth Texas Center for Emerging Infectious Diseases and Department of Molecular Microbiology and Immunology, University of Texas San Antonio, San Antonio, Texas, USA.ORCID 0009-0003-9567-9051
Nikhil PatelSouth Texas Center for Emerging Infectious Diseases and Department of Molecular Microbiology and Immunology, University of Texas San Antonio, San Antonio, Texas, USA.ORCID 0009-0004-2343-2612
Xhavit ZogajSouth Texas Center for Emerging Infectious Diseases and Department of Molecular Microbiology and Immunology, University of Texas San Antonio, San Antonio, Texas, USA.ORCID 0009-0008-7242-3332
Sebastian S CociobaBinomica Labs, Long Island City, New York, USA.ORCID 0000-0002-6821-2996
Karl E KloseSouth Texas Center for Emerging Infectious Diseases and Department of Molecular Microbiology and Immunology, University of Texas San Antonio, San Antonio, Texas, USA.ORCID 0000-0003-2007-1407

Funding

Brown FoundationNational Institute of Allergy and Infectious Diseases T32AI184340Robert J. Kleberg, Jr. and Helen C. Kleberg FoundationSan Antonio Area FoundationSan Antonio Partnership for Precision Therapeutics
6 · The paper itself

Abstract

Chromophore-containing proteins (CCPs), including fluorescent and non-fluorescent (chromoproteins), have been widely used in microbiological research. However, several roadblocks often limit their use in non-model bacterial species, including efficient transformation, suitable plasmid origins of replication, and optimal promoter choice. Here, we have engineered a set of 32 shuttle plasmids designed to overcome these roadblocks in an effort to streamline this process for future research. We have selected eight different CCPs: eforCP, YukonOFP, DasherGFP, tinsel Purple, aeBlue, FuGFP, super-folder GFP, and super-folder Cherry2. To broaden the potential host range, we utilized two distinct backbones with p15a either fused to a IMPORTANCE: Chromophore-containing proteins (CCPs), including both fluorescent proteins and pigment-producing (non-fluorescent) chromoproteins, have become invaluable tools for microbial research. However, their successful implementation in understudied bacterial species lacking established genetic tools often requires substantial time and resources. Our goal was to develop a set of plasmid-based vectors that could streamline CCP expression in gram-negative bacteria. To do so, we developed a set of 32 plasmid vectors, the pKEK-Chrom plasmid series, specifically designed to facilitate CCP expression across different bacteria, including

Indexed as

BacteriaGenetic VectorsLuminescent ProteinsPlasmidsEscherichia coliPromoter Regions, GeneticLuminescent ProteinsAcinetobacter baumanniibroad-host rangechromoproteinsFrancisella novicidaGolden Gate assemblynon-model bacteriaplasmidpromoter exchangeRSF1010Vibrio alginolyticus

Identifiers

PMID40353662
PMCPMC12175534

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.