Evidence map›Paper›PMID 40352095›Full record

ArticleBMC methods2025

A dual-fluorescence assay for gene delivery vehicle screening in macrophages with an inflammation-inducible reporter construct.

Allie Ivy, Shelby N Bess, Shilpi Agrawal, Varun Kochar, Abbey L Stokes, Timothy J Muldoon, Christopher E Nelson

Abstract read
In one paragraph

Article in BMC methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Allie IvyDepartment of Biomedical Engineering, University of Arkansas, 120 John A. White Jr. Engineering Hall, Fayetteville, AR 72701 USA.
Shelby N BessDepartment of Biomedical Engineering, University of Arkansas, 120 John A. White Jr. Engineering Hall, Fayetteville, AR 72701 USA.
Shilpi AgrawalDepartment of Biomedical Engineering, University of Arkansas, 120 John A. White Jr. Engineering Hall, Fayetteville, AR 72701 USA.
Varun KocharDepartment of Biomedical Engineering, University of Arkansas, 120 John A. White Jr. Engineering Hall, Fayetteville, AR 72701 USA.
Abbey L StokesDepartment of Biomedical Engineering, University of Arkansas, 120 John A. White Jr. Engineering Hall, Fayetteville, AR 72701 USA.
Timothy J MuldoonDepartment of Biomedical Engineering, University of Arkansas, 120 John A. White Jr. Engineering Hall, Fayetteville, AR 72701 USA.
Christopher E NelsonDepartment of Biomedical Engineering, University of Arkansas, 120 John A. White Jr. Engineering Hall, Fayetteville, AR 72701 USA.

Funding

Unraveling Gene-Environment Interactions Shaping Metabolism: A Multi-Omics Analysis in DrosophilaP20GM139768 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI Megan Elizabeth Rosa-Caldwell · 2021 to 2026
$17.0M
Exploring genomic and cellular determinants of gene therapy durabilityR35GM155433 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI Christopher Nelson · 2024 to 2026
$1.1M
Non-viral delivery of CRISPR/Cas9 for targeted gene replacementR00EB023979 · NIBIB · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI NELSON, CHRISTOPHER · 2019 to 2021
$736k
Single Cell RNA Sequencing (scRNA-seq) InstrumentationS10OD032338 · OD · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI WOLCHOK, JEFFREY · 2022 to 2022
$216k
Non-viral delivery of CRISPR/Cas9 for targeted gene replacementK99EB023979 · NIBIB · DUKE UNIVERSITY · PI NELSON, CHRISTOPHER · 2018 to 2018
$86k
NIBIB NIH HHS K99 EB023979NIBIB NIH HHS R00 EB023979NIGMS NIH HHS P20 GM139768NIGMS NIH HHS R35 GM155433NIH HHS S10 OD032338
6 · The paper itself

Abstract

Background: Macrophages are a promising target for therapeutics in various applications such as regenerative medicine and immunotherapy for cancer. Due to their plastic nature, macrophages can switch from a non-activated state to activated with the smallest environmental change. For macrophages to be effective in their respective applications, screening for phenotypic changes is necessary to elucidate the cell response to different delivery vehicles, vaccines, small molecules, and other stimuli. Methods: We created a sensitive and dynamic high-throughput screening method for macrophages based on the activation of NF-κB. For this reporter, we placed an mRFP1 fluorescence gene under the control of an inflammatory promoter, which recruits NF-κB response elements to promote expression during the inflammatory response in macrophages. We characterized the inflammatory reporter based on key markers of an inflammatory response in macrophages including TNF-α cytokine release and immunostaining for inflammatory and non-inflammatory cell surface markers. We compared gene delivery and inflammation of several clinically relevant viral vehicles and commercially available non-viral vehicles. Statistical analysis between groups was performed with a one-way ANOVA with post-hoc Tukey's test. Results: The reporter macrophages demonstrated a dynamic range after LPS stimulation with an EC50 of 0.61 ng/mL that was highly predictive of TNF-α release. Flow cytometry revealed heterogeneity between groups but confirmed population level shifts in pro-inflammatory markers. Finally, we demonstrated utility of the reporter by showing divergent effects with various leading gene delivery vehicles. Discussion: This screening technique developed here provides a dynamic, high-throughput screening technique for determining inflammatory response by mouse macrophages to specific stimuli. The method presented here provides insight into the inflammatory response in mouse macrophages to different viral and non-viral gene delivery methods and provides a tool for high-throughput screening of novel vehicles. Supplementary Information: The online version contains supplementary material available at 10.1186/s44330-025-00030-x.

Indexed as

Gene deliveryInflammationMacrophageNF-κBReporter

Identifiers

PMID40352095
PMCPMC12062070

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.