Evidence map›Paper›PMID 40351403›Full record

ArticlePHAGE (New Rochelle, N.Y.)2025

taxMyPhage: Automated Taxonomy of dsDNA Phage Genomes at the Genus and Species Level.

Andrew Millard, Rémi Denise, Maria Lestido, Moi Taiga Nicholas, Deven Webster, Dann Turner, Thomas Sicheritz-Pontén

Abstract read
In one paragraph

Article in PHAGE (New Rochelle, N.Y.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Genome sequence ofMicrobiology resource announcements · 2026
    Article
  7. Article
  8. Article
  9. Characterization ofPHAGE (New Rochelle, N.Y.) · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Complete genome sequence of a virulentMicrobiology resource announcements · 2026
    Article
  17. A novel temperate phage fromMicrobiology spectrum · 2026
    Article
  18. Rolling outMicrobial genomics · 2026
    Article
  19. Article
  20. Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andrew MillardBecky Mayer Centre for Phage Research, University of Leicester, Leicester, UK.ORCID https://orcid.org/0000-0002-3895-2854
Rémi DeniseAPC Microbiome Ireland & School of Microbiology, University College Cork, Co. Cork, Ireland.
Maria LestidoBecky Mayer Centre for Phage Research, University of Leicester, Leicester, UK.
Moi Taiga NicholasBecky Mayer Centre for Phage Research, University of Leicester, Leicester, UK.ORCID https://orcid.org/0000-0002-5609-868X
Deven WebsterBecky Mayer Centre for Phage Research, University of Leicester, Leicester, UK.
Dann TurnerSchool of Applied Sciences, College of Health, Science and Society, University of the West of England, Bristol, UK.
Thomas Sicheritz-PonténSection for Hologenomics, København K, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Bacteriophages are classified into genera and species based on genomic similarity, a process regulated by the International Committee on the Taxonomy of Viruses. With the rapid increase in phage genomic data there is a growing need for automated classification systems that can handle large-scale genome analyses and place phages into new or existing genera and species. Materials and Methods: We developed Results: Conclusions:

Indexed as

bacteriophagephagestaxonomy

Identifiers

PMID40351403
PMCPMC12060842

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.