Evidence map›Paper›PMID 40348760›Full record

ArticleNature communications2025

Let-7 restrains an epigenetic circuit in AT2 cells to prevent fibrogenic intermediates in pulmonary fibrosis.

Matthew J Seasock, Md Shafiquzzaman, Maria E Ruiz-Echartea, Rupa S Kanchi, Brandon T Tran, Lukas M Simon, Matthew D Meyer, Phillip A Erice, Shivani L Lotlikar, Stephanie C Wenlock and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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4 · The record

Corrections and comments

  • Update of
    2025
5 · Who and what money

Authors and funding

19 authors.

Matthew J Seasock *Immunology & Microbiology Graduate Program, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-5940-5913
Md Shafiquzzaman *Department of Medicine, Section of Immunology, Allergy & Rheumatology, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-4668-0983
Maria E Ruiz-EcharteaDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.
Rupa S KanchiDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.
Brandon T TranCancer & Cell Biology Graduate Program, Baylor College of Medicine, Houston, TX, USA.
Lukas M SimonVerna & Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0001-6148-8861
Matthew D MeyerShared Equipment Authority, Rice University, Houston, TX, USA.ORCID http://orcid.org/0000-0002-0680-6123
Phillip A EriceImmunology & Microbiology Graduate Program, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0001-6349-4480
Shivani L LotlikarDepartment of Medicine, Section of Immunology, Allergy & Rheumatology, Baylor College of Medicine, Houston, TX, USA.
Stephanie C WenlockDepartment of Pathology, University of Cambridge, Cambridge, United Kingdom.
Scott A OchsnerDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.
Anton EnrightDepartment of Pathology, University of Cambridge, Cambridge, United Kingdom.
Alex F CariseyWilliam T. Shearer Center for Immunobiology, Texas Children's Hospital, Houston, TX, USA.ORCID http://orcid.org/0000-0003-1326-2205
Freddy RomeroDepartment of Medicine, Section of Pulmonary, Critical Care and Sleep Medicine, Baylor College of Medicine, Houston, TX, USA.
Ivan O RosasDepartment of Medicine, Section of Pulmonary, Critical Care and Sleep Medicine, Baylor College of Medicine, Houston, TX, USA.
Katherine Y KingDepartment of Pediatrics, Division of Infectious Diseases, Texas Children's Hospital, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-5093-6005
Neil J McKennaDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0001-6689-0104
Cristian CoarfaDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-4183-4939
Antony RodriguezDepartment of Medicine, Section of Immunology, Allergy & Rheumatology, Baylor College of Medicine, Houston, TX, USA. antonyr@bcm.edu.ORCID http://orcid.org/0000-0002-6649-1856

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Suzanne AW Fuqua · 2007 to 2026
$73.9M
Project 5: Pyolytic conversion of PAHs in contaminated sediments into char to eliminate toxicity and enhance soil fertilityP42ES027725 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Nagireddy Putluri · 2020 to 2026
$17.8M
Translational Research Support CoreP30ES030285 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Cheryl L. Walker · 2019 to 2026
$14.7M
Impact of Infection and Inflammation on Primitive HematopoiesisR35HL155672 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI Katherine Yudeh King · 2021 to 2026
$5.1M
The Clinical Translational Research Certificate of Added Qualification ProgramT32GM136554 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Melissa Suter, IGNATIA B VAN DEN VEYVER · 2020 to 2026
$3.0M
Role of Let-7 as genetic modifier of Alzheimer's DiseaseR01HL140398 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI CORRY, DAVID B, RODRIGUEZ, ANTONY · 2018 to 2022
$2.4M
Delineating the role of let-7 microRNA on lung AT2 cell homeostasis, alveolar regeneration, and interstitial lung diseaseR01HL167814 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI Antony Rodriguez · 2023 to 2026
$2.1M
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
Epigenetic modification of hematopoietic stem and progenitor cells in inflammation-induced differentiationF31HL164287 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI TRAN, BRANDON T · 2022 to 2024
$143k
NCI NIH HHS P30 CA125123NCRR NIH HHS S10 RR024574NHLBI NIH HHS F31 HL164287NHLBI NIH HHS R01 HL140398NHLBI NIH HHS R01 HL167814NHLBI NIH HHS R35 HL155672NIEHS NIH HHS P30 ES030285NIEHS NIH HHS P42 ES027725NIGMS NIH HHS T32 GM136554U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL140398U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL155672U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL164287U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL167814U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM136554
6 · The paper itself

Abstract

MicroRNA-mediated post-transcriptional regulation of lung alveolar type 2 (AT2) and AT1 cell differentiation remains understudied. Here, we demonstrate that the let-7 miRNA family plays a homeostatic role in AT2 quiescence by preventing the uncontrolled accumulation of AT2 transitional cells and promoting AT1 differentiation. Using mouse and organoid models, we show that genetic ablation of let-7a1/let-7f1/let-7d cluster (let-7afd) in AT2 cells prevents AT1 differentiation and leads to KRT8 transitional cell accumulation in progressive pulmonary fibrosis. Integration of AGO2-eCLIP with RNA-sequencing identified direct let-7 targets within an oncogene feed-forward regulatory network, including BACH1/EZH2/MYC, which drives an aberrant fibrotic cascade. Additional CUT&RUN-sequencing analyses revealed that let-7afd loss disrupts histone acetylation and methylation, driving epigenetic reprogramming and altered gene transcription in profibrotic AT2 cells. This study identifies let-7 as a central hub linking unchecked oncogenic signaling to impaired AT2 cell plasticity and fibrogenesis.

Indexed as

Alveolar Epithelial CellsEpigenesis, GeneticMicroRNAsPulmonary FibrosisAcetylationAnimalsBasic-Leucine Zipper Transcription FactorsCell DifferentiationEnhancer of Zeste Homolog 2 ProteinHistonesHumansLungMaleMiceMice, Inbred C57BLOrganoidsBasic-Leucine Zipper Transcription FactorsEnhancer of Zeste Homolog 2 ProteinEzh2 protein, mouseHistonesMicroRNAsmirnlet7 microRNA, mouseMyc protein, mouseProto-Oncogene Proteins c-myc

Identifiers

PMID40348760
PMCPMC12065893

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.