Evidence map›Paper›PMID 40347482›Full record

ArticlemAbs2025

Biologics developability data analysis using hierarchical clustering accelerates candidate lead selection, optimization, and preformulation screening.

Kevin James Metcalf, Galen Wo, Jan Paulo Zaragoza, Fahimeh Raoufi, Jeanne Baker, Daoyang Chen, Mehabaw Derebe, Jason Hogan, Amy Hsu, Esther Kofman and 17 more

Abstract read
In one paragraph

Article in mAbs, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Kevin James MetcalfDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Galen WoIT, Merck & Co. Inc, Rahway, NJ, USA.
Jan Paulo ZaragozaDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Fahimeh RaoufiDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Jeanne BakerDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Daoyang ChenDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Mehabaw DerebeDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Jason HoganDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Amy HsuDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Esther KofmanDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
David LeighIT, Merck & Co. Inc, Rahway, NJ, USA.
Mandy LiDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Dan MalashockDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Cate MannIT, Merck & Co. Inc, Rahway, NJ, USA.
Soha MotlaghDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Jihea ParkDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Karthik SathiyamoorthyDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Madhura ShidhoreDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Yinyan TangDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Kevin TengDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Katharine WilliamsIT, Merck & Co. Inc, Rahway, NJ, USA.
Andrew WaightDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Sultan YilmazDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Fan ZhangDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Huimin ZhongDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Laurence Fayadat-DilmanDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.
Marc BaillyDiscovery Biologics, Merck & Co. Inc, Rahway, NJ, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of an optimal single protein sequence at the discovery stage for preclinical and clinical development is critical to the rapid development and overall success of a biologic drug. High throughput developability assessments at the discovery stage are used to rank potent molecules by their biophysical properties, deprioritize suboptimal molecules, or trigger additional rounds of protein engineering. Due to the amount of data acquired for these molecules, manual analysis methods to rank molecules are error prone and time-consuming. Here, we present applications of hierarchical clustering analysis for data-driven lead selection of biologics and preformulation screening using high throughput developability data. Hierarchical clustering analysis was applied here for prioritization of three different antibody modalities, including format and chain pairing of bispecific antibodies, sequence-optimized monoclonal antibodies from affinity maturation, preformulation screening of bispecific scFv-Fab fusion molecules, and monoclonal antibodies from an immunization campaign. This high-throughput method for ranking molecules by their developability characteristics and preformulation properties can substantially simplify, streamline, and accelerate biologics discovery and early development.

Indexed as

Antibodies, BispecificAntibodies, MonoclonalBiological ProductsDrug DiscoveryHigh-Throughput Screening AssaysAnimalsCluster AnalysisData AnalysisHumansProtein EngineeringSingle-Chain AntibodiesAntibodies, BispecificAntibodies, MonoclonalBiological ProductsSingle-Chain AntibodiesAntibody discoveryantibody screeningbiologicsbiophysical propertiesCMCdata-driven decision makingdevelopabilityhierarchical-clustering analysislead selectionmanufacturabilitymonoclonal antibodiespreformulationprotein engineeringstatistical analysis

Identifiers

PMID40347482
PMCPMC12068344

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.