Evidence map›Paper›PMID 40346988›Full record

ArticleAllergy2025

Comprehensive αβ T-Cell Receptor Repertoire Analysis Reveals a Unique CD8+ TCR Landscape in DOCK8-Deficient Patients.

Ceren Bozkurt, Gökhan Cildir, Umran Aba, Rahmi Kutay Erdogan, Nicholas I Warnock, Chung Hoow Kok, Asena Pinar Sefer, Sule Haskologlu, Sidem Didar Tekeoglu, Gülşah Merve Kılınç and 17 more

Abstract read
In one paragraph

Article in Allergy, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. DOCK8 in immune cells: roles and mechanisms.Frontiers in immunology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Ceren BozkurtCan Sucak Research Laboratory for Translational Immunology, Hacettepe University, Ankara, Türkiye.ORCID https://orcid.org/0000-0003-0009-5655
Gökhan CildirCentre for Cancer Biology, University of South Australia and SA Pathology, Adelaide, South Australia, Australia.ORCID https://orcid.org/0000-0001-7457-9164
Umran AbaCan Sucak Research Laboratory for Translational Immunology, Hacettepe University, Ankara, Türkiye.
Rahmi Kutay ErdoganCan Sucak Research Laboratory for Translational Immunology, Hacettepe University, Ankara, Türkiye.
Nicholas I WarnockCentre for Cancer Biology, University of South Australia and SA Pathology, Adelaide, South Australia, Australia.ORCID https://orcid.org/0000-0003-3422-3184
Chung Hoow KokCentre for Cancer Biology, University of South Australia and SA Pathology, Adelaide, South Australia, Australia.
Asena Pinar SeferDivision of Pediatric Allergy and Immunology, School of Medicine, Recep Tayyip Erdogan University, Rize, Türkiye.
Sule HaskologluDepartment of Pediatric Immunology and Allergy, Ankara University Faculty of Medicine, Ankara, Türkiye.
Sidem Didar TekeogluCan Sucak Research Laboratory for Translational Immunology, Hacettepe University, Ankara, Türkiye.
Gülşah Merve KılınçDepartment of Bioinformatics, Graduate School of Health Sciences, Hacettepe University, Ankara, Türkiye.
Canberk IpsirCan Sucak Research Laboratory for Translational Immunology, Hacettepe University, Ankara, Türkiye.ORCID https://orcid.org/0000-0003-0726-5004
Tugba ArikogluDepartment of Pediatric Allergy and Immunology, Faculty of Medicine, Mersin University, Mersin, Türkiye.
Aylin Kont OzhanDepartment of Pediatric Allergy and Immunology, Faculty of Medicine, Mersin University, Mersin, Türkiye.
Saliha EsenbogaIhsan Dogramaci Childrens Hospital, Hacettepe University Faculty of Medicine, Ankara, Türkiye.
Ahmet ÖzenDepartment of Pediatric Allergy and Immunology, Jeffrey Modell Diagnostic and Research Center for Primary Immunodeficiencies, the Isil Berat Barlan Center for Translational Medicine, Faculty of Medicine, Marmara University, Istanbul, Türkiye.
Elif Karakoç-AydinerDepartment of Pediatric Allergy and Immunology, Jeffrey Modell Diagnostic and Research Center for Primary Immunodeficiencies, the Isil Berat Barlan Center for Translational Medicine, Faculty of Medicine, Marmara University, Istanbul, Türkiye.
Sevgi Bilgiç EltanDepartment of Pediatric Allergy and Immunology, Jeffrey Modell Diagnostic and Research Center for Primary Immunodeficiencies, the Isil Berat Barlan Center for Translational Medicine, Faculty of Medicine, Marmara University, Istanbul, Türkiye.ORCID https://orcid.org/0000-0003-0561-3343
Çigdem AydogmusDepartment of Pediatric Allergy and Clinical Immunology, University of Health Sciences, Istanbul Basaksehir Cam and Sakura City Hospital, Istanbul, Türkiye.
Candan IslamogluDepartment of Pediatric Immunology and Allergy, Ankara University Faculty of Medicine, Ankara, Türkiye.
Kübra BaskınDepartment of Pediatric Immunology and Allergy, Gazi University Faculty of Medicine, Ankara, Türkiye.
Betul KaraatmacaDepartment of Pediatric Allergy and Immunology, University of Health Sciences, Ankara Bilkent City Hospital, Ankara, Türkiye.
Ayse MetinDepartment of Pediatric Allergy and Immunology, University of Health Sciences, Ankara Bilkent City Hospital, Ankara, Türkiye.
Deniz ÇagdaşIhsan Dogramaci Childrens Hospital, Hacettepe University Faculty of Medicine, Ankara, Türkiye.
Figen DoguDepartment of Pediatric Immunology and Allergy, Ankara University Faculty of Medicine, Ankara, Türkiye.
Aydan IkinciogullariDepartment of Pediatric Immunology and Allergy, Ankara University Faculty of Medicine, Ankara, Türkiye.
Safa BarisDepartment of Pediatric Allergy and Immunology, Jeffrey Modell Diagnostic and Research Center for Primary Immunodeficiencies, the Isil Berat Barlan Center for Translational Medicine, Faculty of Medicine, Marmara University, Istanbul, Türkiye.ORCID https://orcid.org/0000-0002-4730-9422
Baran ErmanCan Sucak Research Laboratory for Translational Immunology, Hacettepe University, Ankara, Türkiye.ORCID https://orcid.org/0000-0001-9398-8465

Funding

Hacettepe ÜniversitesiThe Hospital Research FoundationThe Marmara University Scientific Research Project Coordination Unit ADT-2025-11514The Scientific and Technological Research Council of Türkiye (TUBITAK) 121S667The Scientific and Technological Research Council of Türkiye (TUBITAK) 123S777The Scientific Research Projects Coordination Unit of Hacettepe University THD-2022-20180The Scientific Research Projects Coordination Unit of Hacettepe University THD-2024-21191The Scientific Research Projects Coordination Unit of Hacettepe University TKB-2021-19539Türkiye Bilimsel ve Teknolojik Araştırma Kurumu
6 · The paper itself

Abstract

backgroundDedicator of cytokinesis protein 8 (DOCK8) is a guanine nucleotide exchange factor highly expressed in, and critical for, the function of various innate and adaptive immune cells. DOCK8 deficiency leads to combined immunodeficiency characterized by susceptibility to infections, autoimmunity, and a severe Th2-type immune response. While dysfunction in various T cell subsets has been implicated in these phenotypes, a comprehensive analysis of the T-cell receptor (TCR) repertoire in these patients has not yet been documented. This study investigates the αβ TCR repertoire in DOCK8-deficient patients to identify features related to disease pathogenesis and explore the potential role of TCR repertoire alterations in disease development.

methodsWe compared immune repertoire profiles determined by high-throughput TCR sequencing of circulating CD4+ and CD8+ T cells from patients with DOCK8 deficiency (n = 10) to healthy controls (n = 7) and patients with ataxia-telangiectasia (AT) (n = 5).

resultsDifferent diversity analyses revealed a restricted TRA and TRB repertoire in both CD4+ and CD8+ T cells from DOCK8-deficient patients, with the restriction being more pronounced in CD8+ T cells. Skewed usage of individual variable (V) and joining (J) genes and potentially self-reactive CD8+ T cell clones, as determined by hydrophobicity and cysteine indices, were identified in DOCK8-deficient patients.

conclusionOur study represents the most comprehensive immune repertoire analysis in DOCK8 deficiency. The identification of a significantly restricted αβ TCR repertoire, along with the detection of potentially autoreactive clones, highlights the crucial role of immune repertoire profiling in elucidating the pathogenesis of DOCK8 deficiency.

Indexed as

CD8-Positive T-LymphocytesGuanine Nucleotide Exchange FactorsReceptors, Antigen, T-Cell, alpha-betaAdolescentAdultCD4-Positive T-LymphocytesChildChild, PreschoolFemaleHumansImmunophenotypingMaleDOCK8 protein, humanGuanine Nucleotide Exchange FactorsReceptors, Antigen, T-Cell, alpha-betaautoimmunityDOCK8 deficiencyimmune repertoire sequencingT‐cell receptor repertoire

Identifiers

PMID40346988
PMCPMC12444818

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.