Evidence map›Paper›PMID 40346906›Full record

ArticleMicrobial biotechnology2025

Characterisation and Harnessing of 5-Hydroxymethylfurfural Metabolism in Pseudomonas umsongensis GO16 for the Production of 2,5-Furandicarboxylic Acid.

Rhys Orimaco, Pauric Donnelly, Seán Sexton, Aoife McLoughlin, Sophie Kelly, Kevin E O'Connor, Nick Wierckx, Tanja Narančić

Abstract read
In one paragraph

Article in Microbial biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Rhys OrimacoUCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Dublin 4, Ireland.ORCID https://orcid.org/0009-0002-0290-6431
Pauric DonnellyUCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Dublin 4, Ireland.
Seán SextonUCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Dublin 4, Ireland.
Aoife McLoughlinUCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Dublin 4, Ireland.
Sophie KellyUCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Dublin 4, Ireland.
Kevin E O'ConnorUCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Dublin 4, Ireland.ORCID https://orcid.org/0000-0001-7202-0076
Nick WierckxInstitute of bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich, Jülich, Germany.
Tanja NarančićUCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Dublin 4, Ireland.ORCID https://orcid.org/0000-0003-3269-2200

Funding

Horizon 2020 Framework Programme 953073Science Foundation Ireland 21/RC/1037_P2
6 · The paper itself

Abstract

In the search for biobased alternatives to traditional fossil plastics, 2,5-furandicarboxylic acid (FDCA) represents a potential substitute to terephthalic acid (TPA), a monomer of the ubiquitous polyester, polyethylene terephthalate (PET). Pseudomonas umsongensis GO16, which can metabolise TPA and ethylene glycol (EG), can also oxidise 5-hydroxymethylfurfural (HMF), a precursor to FDCA. The enzymes involved in the oxidation to FDCA, PsfA and PsfG, were identified and characterised. Deletion of FDCA decarboxylase HmfF involved in the conversion of FDCA to furoic acid, and subsequently to a central metabolic intermediate, 2-ketoglutarate, allowed for the accumulation of FDCA. GO16 ΔhmfF cells were grown on glycerol, TPA, EG or mock PET hydrolysate, and the catalyst was then used for the biotransformation of HMF to FDCA. When TPA was used as a growth substrate and to power the biotransformation, the transport of 5-hydroxymethyl-2-furancarboxylic acid (HMFCA) into the cytoplasm represented a rate-limiting step in HMF oxidation. De-bottlenecking transport limitations through in trans overexpression of the HMFCA transporter (HmfT) along with the PsfA aldehyde dehydrogenase and PsfG alcohol dehydrogenase allowed 100% conversion of 50 mM HMF to FDCA within 24 h when TPA, EG or mock PET hydrolysate were used to grow the biocatalyst and subsequently to power the biotransformation. This expands the repertoire of valuable products obtained from engineered P. umsongensis GO16 in the strategy to bio-upcycle post-consumer PET.

Indexed as

Dicarboxylic AcidsFuraldehydeFuransPseudomonasBacterial ProteinsBiotransformationGene DeletionMetabolic EngineeringMetabolic Networks and PathwaysOxidation-ReductionPolyethylene Terephthalates2,5-furandicarboxylic acid5-hydroxymethylfurfuralBacterial ProteinsDicarboxylic AcidsFuraldehydeFuransPolyethylene Terephthalates2,5‐Furandicaboxylic acid (FDCA)5‐Hydroxymethylfurfural (HMF)biotransformationplasticspolyethylene terephthalate (PET)pseudomonasupcycling

Identifiers

PMID40346906
PMCPMC12064950

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.