Evidence map›Paper›PMID 40346194›Full record

Reviewnpj antimicrobials and resistance2025

Tools and challenges in the use of routine clinical data for antimicrobial resistance surveillance.

Kathryn E Holt, Megan E Carey, Clare Chandler, James H Cross, Zoe A Dyson, Nicholas Furnham, Rebecca E Glover, Mollie Virgo, Gwenan M Knight

Abstract readReview
In one paragraph

Review in npj antimicrobials and resistance, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Enhancing surveillance of foodborne bacteria and antimicrobial resistance using a large centralized laboratory database: Case study of Campylobacter and nontyphoidal Salmonella in Peru.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2026
    Article
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  3. Review
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  8. Antimicrobial stewardship at a tertiary center in Portugal: insights from prescribers.Antimicrobial stewardship & healthcare epidemiology : ASHE · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kathryn E HoltLondon School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK. kat.holt@lshtm.ac.uk.
Megan E CareyLondon School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK.
Clare ChandlerLondon School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK.
James H CrossLondon School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK.
Zoe A DysonLondon School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK.
Nicholas FurnhamLondon School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK.
Rebecca E GloverLondon School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK.
Mollie VirgoLondon School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK.
Gwenan M KnightLondon School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK.

Funding

Wellcome Trust
6 · The paper itself

Abstract

Routine clinical microbiology data are widely used for antimicrobial resistance (AMR) surveillance, but data availability and quality vary. In this Perspective, we explore the technical challenges of utilising routine data to inform action at various levels, and summarise emerging open-source technical solutions for hospital-level data collection, aggregation, and sharing. We highlight a need for agreed-upon data standards, and tools that support both facility-level and public health surveillance.

Identifiers

PMID40346194
PMCPMC12064641

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.