Evidence map›Paper›PMID 40344089›Full record

ArticlePLoS genetics2025

The fourspine stickleback (Apeltes quadracus) has an XY sex chromosome system with polymorphic inversions on both X and Y chromosomes.

Zuyao Liu, Amy L Herbert, Yingguang Frank Chan, Marek Kučka, David M Kingsley, Catherine L Peichel

Abstract read
In one paragraph

Article in PLoS genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Zuyao LiuDivision of Evolutionary Ecology, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland.ORCID https://orcid.org/0000-0001-8972-1426
Amy L HerbertDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, California, United States of America.ORCID https://orcid.org/0000-0001-9415-3857
Yingguang Frank ChanFriedrich Miescher Laboratory of the Max Planck Society, Tübingen, Germany.ORCID https://orcid.org/0000-0001-6292-9681
Marek KučkaFriedrich Miescher Laboratory of the Max Planck Society, Tübingen, Germany.
David M KingsleyDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, California, United States of America.
Catherine L PeichelDivision of Evolutionary Ecology, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland.ORCID https://orcid.org/0000-0002-7731-8944

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Teleost fish are well-known for possessing a diversity of sex chromosomes and for undergoing frequent turnovers of these sex chromosomes. However, previous studies have mainly focused on variation between species, while comparatively little attention has been given to sex chromosome polymorphisms within species, which may capture early stages of sex chromosome changes. To better understand the evolution of sex chromosomes, we used the fourspine stickleback (Apeltes quadracus) as a model organism. Previous cytogenetic studies suggested that females of this species possessed a ZW heteromorphic sex chromosome system. However, genetic crosses and our whole-genome sequencing of three geographically distinct wild populations revealed that A. quadracus has an XY sex chromosome on chromosome 23. This chromosome has not previously been identified as a sex chromosome in any other stickleback species, indicating a recent sex chromosome turnover. We also identified two genes - rxfp2a and zar1l - as novel candidate sex determination genes. Notably, we observed inversions on both the X and Y chromosomes in different populations, resulting in distinctive patterns of differentiation between the X and Y chromosomes across populations. The new sex chromosome and intraspecies inversion polymorphisms observed in A. quadracus provide an excellent system for future work assessing the relative fitness effects of the inversions, which will enable testing theoretical models about the drivers of sex chromosome evolution and turnover.

Indexed as

Chromosome InversionSmegmamorphaX ChromosomeY ChromosomeAnimalsEvolution, MolecularFemaleMalePolymorphism, GeneticSex ChromosomesSex Determination Processes

Identifiers

PMID40344089
PMCPMC12121912

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.