Evidence map›Paper›PMID 40344070›Full record

ArticleScience advances2025

Network analysis with quantum dynamics clarifies why photosystem II exploits both chlorophyll a and b.

Eunchul Kim, Daekyung Lee, Souichi Sakamoto, Ju-Yeon Jo, Mauricio Vargas, Akihito Ishizaki, Jun Minagawa, Heetae Kim

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Eunchul KimDivision of Environmental Photobiology, National Institute for Basic Biology, Okazaki 444-8585, Japan.ORCID 0000-0003-3380-3953
Daekyung LeeDepartment of Energy Engineering, Korea Institute of Energy Technology, Naju 58330, Korea.ORCID 0000-0003-2640-5658
Souichi SakamotoInstitute for Molecular Science, Okazaki 444-8585, Japan.ORCID 0000-0002-4988-8579
Ju-Yeon JoInstitute for Molecular Science, Okazaki 444-8585, Japan.
Mauricio VargasInstituto de Matemáticas, Universidad de Talca, Talca 3460000, Chile.ORCID 0009-0000-8135-2814
Akihito IshizakiInstitute for Molecular Science, Okazaki 444-8585, Japan.ORCID 0000-0002-0246-4461
Jun MinagawaDivision of Environmental Photobiology, National Institute for Basic Biology, Okazaki 444-8585, Japan.ORCID 0000-0002-3028-3203
Heetae KimDepartment of Energy Engineering, Korea Institute of Energy Technology, Naju 58330, Korea.ORCID 0000-0002-5688-2626

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In green plants, chlorophyll a and chlorophyll b are the predominant pigments bound to light-harvesting proteins. While the individual characteristics of these chlorophylls are well understood, the advantages of their coexistence remain unclear. In this study, we establish a method to simulate excitation energy transfer within the entire photosystem II supercomplex by using network analysis integrated with quantum dynamic calculations. We then investigate the effects of the coexistence of chlorophyll a and chlorophyll b by comparing various chlorophyll compositions. Our results reveal that the natural chlorophyll composition allows the excited energy to preferentially flow through specific domains that act as safety valves, preventing downstream overflow. Our findings suggest that the light-harvesting proteins in a photosystem II supercomplex achieve evolutionary advantages with the natural chlorophyll a/b ratio, capturing light energy efficiently and safely across various light intensities. Using our framework, one can better understand how green plants harvest light energy and adapt to changing environmental conditions.

Indexed as

ChlorophyllChlorophyll APhotosystem II Protein ComplexQuantum TheoryEnergy TransferLightLight-Harvesting Protein ComplexesChlorophyllChlorophyll Achlorophyll bLight-Harvesting Protein ComplexesPhotosystem II Protein Complex

Identifiers

PMID40344070
PMCPMC12063655

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.