Evidence map›Paper›PMID 40344052›Full record

ArticleScience advances2025

Multiplexing light-inducible recombinases to control cell fate, Boolean logic, and cell patterning in mammalian cells.

Cristina Tous, Ian S Kinstlinger, Maya E L Rice, Jenny Deng, Wilson W Wong

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Cristina TousDepartment of Biomedical Engineering, Biological Design Center, Boston University, Boston, MA 02215, USA.ORCID 0000-0003-4007-2001
Ian S KinstlingerDepartment of Biomedical Engineering, Biological Design Center, Boston University, Boston, MA 02215, USA.ORCID 0000-0002-7335-6644
Maya E L RiceDepartment of Biomedical Engineering, Biological Design Center, Boston University, Boston, MA 02215, USA.ORCID 0009-0000-2795-7038
Jenny DengDepartment of Biomedical Engineering, Biological Design Center, Boston University, Boston, MA 02215, USA.ORCID 0009-0007-0925-3281
Wilson W WongDepartment of Biomedical Engineering, Biological Design Center, Boston University, Boston, MA 02215, USA.ORCID 0000-0001-8394-889X

Funding

NRSA Training CoreTL1TR001410 · NCATS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI KOTTON, DARRELL N. · 2015 to 2024
$4.3M
Multiplexed and Logical Control of the Mammalian Transcriptome Using Cas13R01EB031904 · NIBIB · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI WONG, WILSON · 2021 to 2024
$1.6M
Advanced recombinase-based gene expression technology in mammalian cellsR01GM129011 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI WONG, WILSON · 2019 to 2022
$1.5M
Synthetic morphogenesis to recapitulate multicellular airway branching patternsF32HL160194 · NHLBI · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI KINSTLINGER, IAN S · 2023 to 2023
$70k
NCATS NIH HHS TL1 TR001410NHLBI NIH HHS F32 HL160194NIBIB NIH HHS R01 EB031904NIGMS NIH HHS R01 GM129011
6 · The paper itself

Abstract

Light-inducible regulatory proteins are powerful tools to interrogate fundamental mechanisms driving cellular behavior. In particular, genetically encoded photosensory domains fused to split proteins can tightly modulate protein activity and gene expression. While light-inducible split protein systems have performed well individually, few multichromatic and orthogonal gene regulation systems exist in mammalian cells. The design space for multichromatic circuits is limited by the small number of orthogonally addressable optogenetic switches and the types of effectors that can be actuated by them. We developed a library of red light-inducible recombinases and directed patterned myogenesis in a mesenchymal fibroblast-like cell line. To address the limited number of light-inducible domains (LIDs) responding to unique excitation spectra, we multiplexed light-inducible recombinases with our "Boolean logic and arithmetic through DNA excision" (BLADE) platform. Multiplexed optogenetic tools will be transformative for understanding the role of multiple interacting genes and their spatial context in endogenous signaling networks.

Indexed as

LightOptogeneticsRecombinasesAnimalsCell DifferentiationCell LineGene Expression RegulationHumansMuscle DevelopmentRecombinases

Identifiers

PMID40344052
PMCPMC12063640

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.