Evidence map›Paper›PMID 40343812›Full record

ArticleBiomacromolecules2025

Applying Computational Protein Design to Engineer Affibodies for Affinity-controlled Delivery of Vascular Endothelial Growth Factor and Platelet-Derived Growth Factor.

Justin E Svendsen, Madeleine R Ford, Chandler L Asnes, Simon C Oh, Jonathan Dorogin, Karly M Fear, Johnathan R O'Hara-Smith, Lauren O Chisholm, Sophia R Phillips, Michael J Harms and 2 more

Abstract read
In one paragraph

Article in Biomacromolecules, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Justin E SvendsenKnight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403, United States.ORCID 0000-0002-5873-5339
Madeleine R FordKnight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403, United States.
Chandler L AsnesKnight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403, United States.
Simon C OhKnight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403, United States.
Jonathan DoroginKnight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403, United States.
Karly M FearKnight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403, United States.
Johnathan R O'Hara-SmithInstitute of Molecular Biology, University of Oregon, Eugene, Oregon 97403, United States.
Lauren O ChisholmDepartment of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States.
Sophia R PhillipsDepartment of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States.
Michael J HarmsDepartment of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States.ORCID 0000-0002-0241-4122
Parisa HosseinzadehKnight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403, United States.ORCID 0000-0002-3128-7433
Marian H HettiaratchiKnight Campus for Accelerating Scientific Impact, University of Oregon, Eugene, Oregon 97403, United States.ORCID 0000-0001-8187-4575

Funding

MOLECULAR BIOLOGY AND BIOPHYSICST32GM007759 · NIGMS · UNIVERSITY OF OREGON · PI NOLEN, BRADLEY J · 1985 to 2021
$8.5M
Modulating Protein Activity in Tissue Repair using Engineered Affinity-based BiomaterialsR35GM147507 · NIGMS · UNIVERSITY OF OREGON · PI Marian Hirushika Hettiaratchi · 2022 to 2026
$2.0M
A Directed Evolution Approach to Affinity-Based Protein DeliveryR21EB032112 · NIBIB · UNIVERSITY OF OREGON · PI HETTIARATCHI, MARIAN HIRUSHIKA · 2021 to 2023
$602k
Development of affinity-based delivery systems for angiogenic growth factorsF31HL176164 · NHLBI · UNIVERSITY OF OREGON · PI Justin E Svendsen · 2024 to 2026
$147k
NHLBI NIH HHS F31 HL176164NIBIB NIH HHS R21 EB032112NIGMS NIH HHS R35 GM147507NIGMS NIH HHS T32 GM007759
6 · The paper itself

Abstract

Vascular endothelial growth factor (VEGF) and platelet-derived growth factor (PDGF) play coordinated roles in angiogenesis. However, current biomaterial delivery vehicles for these proteins have a limited ability to precisely control the kinetics of protein release, preventing systematic exploration of their temporal effects. Here, we combined yeast surface display and computational protein design to engineer eight VEGF-specific and PDGF-specific protein binders called affibodies with a broad range of affinities for controlled protein release. Soluble affibodies modulated protein bioactivity as evidenced by changes in VEGF-induced endothelial cell proliferation and luminescent output of a PDGF-responsive cell line. Affibody-conjugated hydrogels enabled tunable protein release over 7 days. VEGF and PDGF released from affibody-conjugated hydrogels exhibited higher bioactivity than proteins released from hydrogels without affibodies, suggesting that these engineered affinity interactions could prolong protein bioactivity. This work underscores the power of computational protein design to enhance biomaterial functionality, creating a platform for tunable protein delivery.

Indexed as

Platelet-Derived Growth FactorProtein EngineeringRecombinant Fusion ProteinsVascular Endothelial Growth Factor ACell ProliferationDrug Delivery SystemsHumansHuman Umbilical Vein Endothelial CellsHydrogelsHydrogelsPlatelet-Derived Growth FactorRecombinant Fusion ProteinsVascular Endothelial Growth Factor AVEGFA protein, human

Identifiers

PMID40343812
PMCPMC12152956

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.