Evidence map›Paper›PMID 40340859›Full record

ArticleGenome biology2025

Determining the functional relationship between epigenetic and physical chromatin domains in Drosophila.

Sandrine Denaud, Gonzalo Sabarís, Marco Di Stefano, Giorgio-Lucio Papadopoulos, Bernd Schuettengruber, Giacomo Cavalli

Abstract read
In one paragraph

Article in Genome biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sandrine Denaud *Institute of Human Genetics, UMR9002 CNRS and University of Montpellier, 141 Rue de La Cardonille, Montpellier, Cedex 5 34396, France.
Gonzalo Sabarís *Institute of Human Genetics, UMR9002 CNRS and University of Montpellier, 141 Rue de La Cardonille, Montpellier, Cedex 5 34396, France.
Marco Di Stefano *Institute of Human Genetics, UMR9002 CNRS and University of Montpellier, 141 Rue de La Cardonille, Montpellier, Cedex 5 34396, France.
Giorgio-Lucio PapadopoulosInstitute of Human Genetics, UMR9002 CNRS and University of Montpellier, 141 Rue de La Cardonille, Montpellier, Cedex 5 34396, France.
Bernd SchuettengruberInstitute of Human Genetics, UMR9002 CNRS and University of Montpellier, 141 Rue de La Cardonille, Montpellier, Cedex 5 34396, France. bernd.schuttengruber@igh.cnrs.fr.
Giacomo CavalliInstitute of Human Genetics, UMR9002 CNRS and University of Montpellier, 141 Rue de La Cardonille, Montpellier, Cedex 5 34396, France. giacomo.cavalli@igh.cnrs.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The tight correlation between topologically associating domains (TADs) and epigenetic domains in Drosophila suggests that the epigenome contributes to define TADs. However, it is still unknown whether histone modifications are essential for TAD formation and structure. By either deleting or shifting key regulatory elements needed to establish the epigenetic signature of Polycomb TADs, we show that the epigenome is not a major driving force for the establishment of TADs. On the other hand, physical domains have an important impact on the formation of epigenetic domains, as they can restrict the spreading of repressive histone marks and looping between cis-regulatory elements.

Indexed as

ChromatinDrosophilaDrosophila melanogasterEpigenesis, GeneticAnimalsDrosophila ProteinsHistone CodeHistonesPolycomb-Group ProteinsChromatinDrosophila ProteinsHistonesPolycomb-Group ProteinsChromatinDrosophilaEpigenomeGenome organizationPcG proteinsTADs

Identifiers

PMID40340859
PMCPMC12060320

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.