Evidence map›Paper›PMID 40340197›Full record

ReviewTrends in biotechnology2025

Self-documenting plasmids.

Sarah I Hernandez, Samuel J Peccoud, Casey-Tyler Berezin, Jean Peccoud

Abstract readReview
In one paragraph

Review in Trends in biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Sarah I HernandezDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, CO, USA.
Samuel J PeccoudGenoFAB, Fort Collins, CO, USA; Department of Electrical Engineering, Colorado State University, Fort Collins, CO, USA.
Casey-Tyler BerezinDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, CO, USA.
Jean PeccoudDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, CO, USA; GenoFAB, Fort Collins, CO, USA; Department of Computer Sciences, Colorado State University, Fort Collins, CO, USA; School of Biomedical Engineering, Colorado State University, Fort Collins, CO, USA; Department of Systems Engineering, Colorado State University, Fort Collins, CO, USA. Electronic address: jean.peccoud@colostate.edu.

Funding

Supplement: Development of a technology to certify engineered DNA moleculesR01GM147816 · NIGMS · COLORADO STATE UNIVERSITY · PI PECCOUD, JEAN M · 2022 to 2024
$1.4M
Leveraging cytoplasmic transcription to develop self-amplifying DNA vaccinesR21AI168482 · NIAID · COLORADO STATE UNIVERSITY · PI PECCOUD, JEAN M · 2023 to 2024
$400k
NIAID NIH HHS R21 AI168482NIGMS NIH HHS R01 GM147816
6 · The paper itself

Abstract

Plasmids are the workhorse of biotechnology. These small DNA molecules are used to produce recombinant proteins and to engineer living organisms. They can be regarded as the blueprints of many biotechnology products. Therefore, it is critical to ensure that the sequences of these DNA molecules match their intended designs. Yet, plasmid verification remains challenging. To secure the exchange of plasmids in research and development workflows, we have developed self-documenting plasmids that encode information about themselves in their own DNA molecules. Users of self-documenting plasmids can retrieve critical information about the plasmid without prior knowledge of the plasmid identity. The insertion of documentation in the plasmid sequence does not preclude their propagation in bacteria or functional fluorescent protein expression in mammalian cells. This technology simplifies plasmid verification, hardens supply chains, and has the potential to transform the protection of intellectual property (IP) in the life sciences.

Indexed as

BiotechnologyPlasmidsbioinformaticscryptographycyberbiosecuritydigital signatureplasmidreproducibilitysequencing

Identifiers

PMID40340197
PMCPMC12353582

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.