Evidence map›Paper›PMID 40338627›Full record

ArticleBlood cancer discovery2025

DNA Methylation Epitypes of Burkitt Lymphoma with Distinct Molecular and Clinical Features.

Nicole Thomas, Carlos A García-Prieto, Kostiantyn Dreval, Laura K Hilton, Jeremy S Abramson, Nancy L Bartlett, Jeffrey Bethony, Jay Bowen, Anthony C Bryan, Corey Casper and 29 more

Abstract read
In one paragraph

Article in Blood cancer discovery, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors.

Nicole Thomas *Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, Canada.ORCID 0009-0007-9026-2715
Carlos A García-Prieto *Cancer Epigenetics Group, Josep Carreras Leukaemia Research Institute (IJC), Barcelona, Spain.ORCID 0000-0001-5021-6916
Kostiantyn DrevalDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, Canada.ORCID 0000-0002-6214-2843
Laura K HiltonDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, Canada.ORCID 0000-0002-6413-6586
Jeremy S AbramsonCenter for Lymphoma, Massachusetts General Hospital, Boston, Massachusetts.ORCID 0000-0001-8467-9257
Nancy L BartlettWashington University School of Medicine, St. Louis, Missouri.ORCID 0000-0001-8470-394X
Jeffrey BethonyGeorge Washington University, Washington, District of Columbia.ORCID 0000-0002-7901-2113
Jay BowenBiopathology Center, Nationwide Children's Hospital, Columbus, Ohio.ORCID 0000-0001-6861-9043
Anthony C BryanBiopathology Center, Nationwide Children's Hospital, Columbus, Ohio.ORCID 0009-0005-9352-3162
Corey CasperAccess to Advanced Health Institute, Seattle, Washington.ORCID 0000-0002-3609-661X
Maureen A DyerClinical Research Directorate, Frederick National Laboratory for Cancer Research, Frederick, Maryland.ORCID 0000-0002-0681-3665
Julie M Gastier-FosterBiopathology Center, Nationwide Children's Hospital, Columbus, Ohio.ORCID 0000-0001-7141-8031
Alina S GerrieCentre for Lymphoid Cancer, BC Cancer, Vancouver, Canada.ORCID 0000-0003-4727-1425
Timothy C GreinerDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, Nebraska.ORCID 0000-0003-1470-8328
Nicholas B GrinerOffice of Cancer Genomics, National Cancer Institute, Bethesda, Maryland.ORCID 0009-0002-3623-9972
Thomas G GrossCenter for Global Health, National Cancer Institute, NIH, Rockville, Maryland.ORCID 0000-0001-5003-6843
Nancy HarrisDepartment of Pathology, Massachusetts General Hospital, Boston, Maryland.
John D IrvinFoundation for Burkitt Lymphoma Research, Geneva, Switzerland.ORCID 0009-0006-6159-3120
Elaine S JaffeLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland.ORCID 0000-0003-4632-0301
Fabio E LealPrograma de Oncovirologia, Instituto Nacional de Cancer, Rio de Janeiro, Brazil.ORCID 0000-0003-1986-3765
Sam M MbulaiteyeDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Silver Spring, Maryland.ORCID 0000-0002-8273-9831
Charles G MullighanDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0002-1871-1850
Andrew J MungallCanada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada.ORCID 0000-0002-0905-2742
Karen L MungallCanada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada.ORCID 0000-0002-9092-4391
Constance NamirembeUganda Cancer Institute, Kampala, Uganda.ORCID 0000-0001-5979-8465
Ariela NoyDepartment of Medicine, Lymphoma Service, Memorial Sloan Kettering Cancer Center, and Weill Cornell Medical School, New York, New York.ORCID 0000-0002-3001-4898
Martin D OgwangSt. Mary's Hospital, Gulu, Uganda.ORCID 0000-0002-4178-2809
Jackson OremUganda Cancer Institute, Kampala, Uganda.ORCID 0000-0002-5366-9010
German OttDepartment of Clinical Pathology, Robert-Bosch-Krankenhaus, and Dr. Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany.ORCID 0000-0001-7990-6793
Hilary PetrelloBiopathology Center, Nationwide Children's Hospital, Columbus, Ohio.ORCID 0009-0004-0625-1254
Steven J ReynoldsDivision of Intramural Research, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland.ORCID 0000-0002-5403-2759
Steven H SwerdlowDivision of Hematopathology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.ORCID 0000-0002-3832-3329
Alexandra Traverse-GlehenService d'Anatomie pathologique, Université Lyon 1/Centre Hospitalier Lyon Sud, Pierre Bénite, France.ORCID 0000-0002-3934-0120
Wyndham H WilsonLymphoid Malignancies Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland.ORCID 0000-0002-2862-9711
Marco A MarraCanada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada.ORCID 0000-0001-7146-7175
Louis M StaudtLymphoid Malignancies Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland.ORCID 0000-0002-1735-2892
David W ScottCentre for Lymphoid Cancer, BC Cancer, Vancouver, Canada.ORCID 0000-0002-0435-5947
Manel EstellerCancer Epigenetics Group, Josep Carreras Leukaemia Research Institute (IJC), Barcelona, Spain.ORCID 0000-0003-4490-6093
Ryan D MorinDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, Canada.ORCID 0000-0003-2932-7800

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Shondra Michelle Miller · 1985 to 2026
$166.9M
Translating genomic discoveries to improved outcomes for high risk acute leukemiaR35CA197695 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Charles G Mullighan · 2017 to 2026
$11.4M
Burkitt Lymphoma Genome Sequencing ProjectCanadian Institutes of Health Research (CIHR)CERCA Programme/Generalitat de Catalunya 2021 SGR01494Fundación Cellex (Cellex Foundation) CEL007National Cancer Institute (NCI) 75N91020F00003National Institute of Allergy and Infectious Diseases (NIAID)NCI NIH HHS 75N91019D00024NCI NIH HHS HHSN261200800001ENCI NIH HHS HHSN261201100007INCI NIH HHS HHSN261201100063CNCI NIH HHS P30 CA008748NCI NIH HHS P30 CA021765NCI NIH HHS R35 CA197695Spanish Ministry of Science and Innovation PID2021-125282OB-I00Terry Fox Research Institute (TFRI) 1043
6 · The paper itself

Abstract

The genetic subtypes of Burkitt lymphoma have been defined, but the role of epigenetics remains to be comprehensively characterized. We searched genomic DNA from 218 patients across four continents for recurrent DNA methylation patterns and their associations with clinical and molecular features. We identified DNA methylation patterns that were not fully explained by the Epstein-Barr virus status or mutation status, leading to two epitypes described here as HypoBL and HyperBL. Each is characterized by distinct genomic and clinical features including global methylation, mutation burden, aberrant somatic hypermutation, and survival outcomes. Methylation, gene expression, and mutational differences between the epitypes support a model in which each arises from a distinct cell of origin. These results, pending validation in external cohorts, point to a refined risk assessment for patients with Burkitt lymphoma who may experience inferior outcomes. SIGNIFICANCE: Burkitt lymphoma can be divided into two epigenetic subtypes (epitypes), each carrying distinct biological, transcriptomic, genomic, and clinical features. Epitype is more strongly associated with clinical and mutational features than the Epstein-Barr virus status or genetic subtype, highlighting an important additional layer of Burkitt lymphoma pathogenesis.

Indexed as

Burkitt LymphomaDNA MethylationEpigenesis, GeneticAdolescentAdultAgedChildFemaleHumansMaleMiddle AgedMutationYoung Adult

Identifiers

PMID40338627
PMCPMC12209777

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.