Evidence map›Paper›PMID 40338317›Full record

ArticleMicrobial ecology2025

Newly Designed Fluorescence In Situ Hybridization Probes Reveal Previously Unknown Endophytic Abilities of Tuber magnatum in Herbaceous Plants.

Simone Graziosi, Lara Deloche, Mélanie Januario, Marc-André Selosse, Aurélie Deveau, Cyrille Bach, Zhixiao Chen, Claude Murat, Mirco Iotti, Philippe Rech and 1 more

Abstract read
In one paragraph

Article in Microbial ecology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Simone GraziosiDepartment of Agricultural and Food Sciences, University of Bologna, Viale G. Fanin 44, 40127, Bologna, Italy. simone.graziosi5@unibo.it.ORCID http://orcid.org/0000-0003-3117-6474
Lara DelocheISYEB, Muséum National d'Histoire Naturelle, CNRS, EPHE-PSL, Sorbonne Université, 57 Rue Cuvier, CP39, 75005, Paris, France.ORCID http://orcid.org/0009-0003-4783-7844
Mélanie JanuarioISYEB, Muséum National d'Histoire Naturelle, CNRS, EPHE-PSL, Sorbonne Université, 57 Rue Cuvier, CP39, 75005, Paris, France.
Marc-André SelosseISYEB, Muséum National d'Histoire Naturelle, CNRS, EPHE-PSL, Sorbonne Université, 57 Rue Cuvier, CP39, 75005, Paris, France.ORCID http://orcid.org/0000-0003-3471-9067
Aurélie DeveauUniversité de Lorraine, INRAE, 54000, Nancy, IAM, France.ORCID http://orcid.org/0000-0001-6266-5241
Cyrille BachUniversité de Lorraine, INRAE, 54000, Nancy, IAM, France.ORCID http://orcid.org/0000-0002-3987-3226
Zhixiao ChenUniversité de Lorraine, INRAE, 54000, Nancy, IAM, France.ORCID http://orcid.org/0009-0005-6257-6851
Claude MuratUniversité de Lorraine, INRAE, 54000, Nancy, IAM, France.ORCID http://orcid.org/0000-0003-0685-7307
Mirco IottiDepartment of Life, Health and Environmental Science, University of L'Aquila, Via Vetoio, 67100, Coppito, L'Aquila, Italy.ORCID http://orcid.org/0000-0003-2705-0385
Philippe RechISYEB, Muséum National d'Histoire Naturelle, CNRS, EPHE-PSL, Sorbonne Université, 57 Rue Cuvier, CP39, 75005, Paris, France. philippe.rech@mnhn.fr.ORCID http://orcid.org/0000-0002-6631-9888
Alessandra ZambonelliDepartment of Agricultural and Food Sciences, University of Bologna, Viale G. Fanin 44, 40127, Bologna, Italy.ORCID http://orcid.org/0000-0003-1710-7069

Funding

European Union - NextGenerationEU under the National Recovery and Resilience Plan (PNRR) - Mission 4 Education and research - Component 2 From research to business - Investment 1.1 Notice Prin 2022 - DD N. 104 del 2/2/2022, from title "Interactions of the white truffle Tuber magnatum with soil microbiome and plants" K272X8 - CUP J53D23010090006The French National Research Agency (ANR), 'Investissements d'Avenir' program, Lab of Excellence ARBRE, UMR IaM. ANR-11-LABX-0002-01
6 · The paper itself

Abstract

Tuber magnatum Picco (the Italian white truffle) is the most valuable and widely appreciated truffle. It is an ectomycorrhizal fungus known to associate with many broadleaf tree species. However, its mycorrhizae are rarely observed in the field, suggesting possible alternative symbiotic strategies, such as endophytism with non-ectomycorrhizal plants. In order to test potential endophytic interactions of T. magnatum with wild plants, a combination of polymerase chain reaction (PCR) and Fluorescence In Situ Hybridization (FISH) approaches were used. Specific FISH probes for T. magnatum were designed, tested in vitro on hyphae and/or ectomycorrhizae, and selected for their specificity. These probes were then used on a wide variety root samples of wild plants collected from three T. magnatum production areas in Italy and previously tested for the presence of T. magnatum mycelium using PCR-specific primers. Molecular analyses detected the presence of T. magnatum in 21 of 100 plant samples analyzed. FISH analysis confirmed the extracellular presence of active T. magnatum hyphae inside the root system of Carex pendula Huds plant. This study provides the first evidence of T. magnatum acting as an endophyte in an herbaceous plant. The newly designed, highly specific T. magnatum FISH probes can be used for further investigations to confirm the endophytic tendencies of T. magnatum and to understand their influence on the life cycle and biology of this fungus.

Indexed as

AscomycotaEndophytesIn Situ Hybridization, FluorescenceMycorrhizaeHyphaeItalyPlant RootsPolymerase Chain ReactionSymbiosisEndophytismFISHNon-ectomycorrhizal host plantsTruffle ecology

Identifiers

PMID40338317
PMCPMC12062114

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.