Evidence map›Paper›PMID 40335892›Full record

ArticleBMC microbiology2025

Comparative genomic analysis of a novel heat-tolerant and euryhaline strain of unicellular marine cyanobacterium Cyanobacterium sp. DS4 from a high-temperature lagoon.

Ching-Nen Nathan Chen, Keng-Min Lin, Yu-Chen Lin, Hsin-Ying Chang, Tze Ching Yong, Yi-Fang Chiu, Chih-Horng Kuo, Hsiu-An Chu

Abstract readComparative Study
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ching-Nen Nathan Chen *Department of Oceanography, National Sun Yat-sen University, Kaohsiung, 804, Taiwan.
Keng-Min Lin *Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 115, Taiwan.
Yu-Chen Lin *Institute of Plant and Microbial Biology, Academia Sinica, Taipei, 115, Taiwan.
Hsin-Ying ChangInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 115, Taiwan.
Tze Ching YongDepartment of Oceanography, National Sun Yat-sen University, Kaohsiung, 804, Taiwan.
Yi-Fang ChiuInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 115, Taiwan.
Chih-Horng KuoInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 115, Taiwan. chk@gate.sinica.edu.tw.
Hsiu-An ChuInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, 115, Taiwan. chuha@gate.sinica.edu.tw.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCyanobacteria have diversified through their long evolutionary history and occupy a wide range of environments on Earth. To advance our understanding of their adaptation mechanisms in extreme environments, we performed stress tolerance characterizations, whole genome sequencing, and comparative genomic analyses of a novel heat-tolerant and euryhaline strain of the unicellular cyanobacterium Cyanobacterium sp. Dongsha4 (DS4). This strain was isolated from a lagoon on Dongsha Island in the South China Sea, a habitat with fluctuations in temperature, salinity, light intensity, and nutrient supply.

resultsDS4 cells can tolerate long-term high-temperature up to 50 ℃ and salinity from 0 to 6.6%, which is similar to the results previously obtained for Cyanobacterium aponinum. In contrast, most mesophilic cyanobacteria cannot survive under these extreme conditions. Based on the 16S rRNA gene phylogeny, DS4 is most closely related to Cyanobacterium sp. NBRC102756 isolated from Iwojima Island, Japan, and Cyanobacterium sp. MCCB114 isolated from Vypeen Island, India. For comparison with strains that have genomic information available, DS4 is most similar to Cyanobacterium aponinum strain PCC10605 (PCC10605), sharing 81.7% of the genomic segments and 92.9% average nucleotide identity (ANI). Gene content comparisons identified multiple distinct features of DS4. Unlike related strains, DS4 possesses the genes necessary for nitrogen fixation. Other notable genes include those involved in photosynthesis, central metabolisms, cyanobacterial starch metabolisms, stress tolerances, and biosynthesis of novel secondary metabolites.

conclusionsThese findings promote our understanding of the physiology, ecology, evolution, and stress tolerance mechanisms of cyanobacteria. The information is valuable for future functional studies and biotechnology applications of heat-tolerant and euryhaline marine cyanobacteria.

Indexed as

CyanobacteriaGenome, BacterialSeawaterThermotoleranceChinaDNA, BacterialGenomicsHot TemperaturePhylogenyRNA, Ribosomal, 16SSalinityWhole Genome SequencingDNA, BacterialRNA, Ribosomal, 16SComparative genomicsCyanobacteriumGenomeThermotolerance

Identifiers

PMID40335892
PMCPMC12060301

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.