Evidence map›Paper›PMID 40335854›Full record

ArticleCurrent microbiology2025

Characterization and De Novo Genome Assembly for New Rhizobium Ruizarguesonis Rhizobial Strain Vst36-3 Involved in Symbiosis with Pisum and Vicia Plants.

Alexandra V Dolgikh, Elizaveta A Salnikova, Alina M Dymo, Elizaveta S Kantsurova, Tatyana S Aksenova, Oleg S Yuzikhin, Oksana N Kurchak, Olga P Onishchuk, Elena A Dolgikh

Abstract read
PubMed Publisher
In one paragraph

Article in Current microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alexandra V Dolgikh *All-Russia Research Institute for Agricultural Microbiology, Podbelsky Chausse 3, 196608, St.-Petersburg, Russia.
Elizaveta A Salnikova *All-Russia Research Institute for Agricultural Microbiology, Podbelsky Chausse 3, 196608, St.-Petersburg, Russia.
Alina M DymoAll-Russia Research Institute for Agricultural Microbiology, Podbelsky Chausse 3, 196608, St.-Petersburg, Russia.
Elizaveta S KantsurovaAll-Russia Research Institute for Agricultural Microbiology, Podbelsky Chausse 3, 196608, St.-Petersburg, Russia.
Tatyana S AksenovaAll-Russia Research Institute for Agricultural Microbiology, Podbelsky Chausse 3, 196608, St.-Petersburg, Russia.
Oleg S YuzikhinAll-Russia Research Institute for Agricultural Microbiology, Podbelsky Chausse 3, 196608, St.-Petersburg, Russia.
Oksana N KurchakAll-Russia Research Institute for Agricultural Microbiology, Podbelsky Chausse 3, 196608, St.-Petersburg, Russia.
Olga P OnishchukAll-Russia Research Institute for Agricultural Microbiology, Podbelsky Chausse 3, 196608, St.-Petersburg, Russia.
Elena A DolgikhAll-Russia Research Institute for Agricultural Microbiology, Podbelsky Chausse 3, 196608, St.-Petersburg, Russia. ea.dolgikh@arriam.ru.ORCID http://orcid.org/0000-0002-5375-0943

Funding

Russian Science Foundation 24-16-00180
6 · The paper itself

Abstract

Pea and vetch are the important legume crops used as food, forage, and green manure in agriculture. Several new rhizobial isolates were obtained from vetch Vicia sativa root nodules. For one of them, Vst36-3, the nodulation test showed various specificity in relation to plant hosts from the Fabeae tribe, such as pea and vetch. It is in contrast to typical strains of the Rhizobium leguminosarum species complex (Rlc), which formed effective nodules as in pea and vetch. Here, whole genome sequencing was performed followed by de novo genome assembly for Vst36-3 strain. As a result of de novo genome assembly, seven contigs were generated using Oxford Nanopore Technology long reads and subsequently Illumina short reads. Phylogenetic analysis allowed us to identify this strain as Rhizobium ruizarguesonis Vst36-3. Analysis of the Sym plasmid containing the nod and nif genes revealed that R. ruizarguesonis Vst36-3 has a complete suite of essential genes for the development of symbiosis. Nevertheless, this new strain forms ineffective nodules in pea. This makes Rhizobium ruizarguesonis Vst36-3 attractive for the search and investigation of new factors of host specificity in future.

Indexed as

Genome, BacterialPisum sativumRhizobiumSymbiosisViciaPhylogenyRoot Nodules, PlantWhole Genome Sequencing

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.