Evidence map›Paper›PMID 40335559›Full record

ArticleScientific data2025

A spatio-temporal transcriptomic and proteomic dataset of developing Brassica napus seeds.

Dominic Knoch, Nils Rugen, Johannes Thiel, Marc C Heuermann, Markus Kuhlmann, Paride Rizzo, Rhonda C Meyer, Steffen Wagner, Jos H M Schippers, Hans-Peter Braun and 1 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Advanced breeding techniques inPlant signaling & behavior · 2026
    Review
  2. Review
  3. Review
  4. Strawberry atlas:PeerJ · 2026
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Dominic KnochLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Department of Molecular Genetics, Corrensstraße 3, 06466 Seeland OT, Gatersleben, Germany.ORCID http://orcid.org/0000-0002-9362-3105
Nils RugenInstitute of Plant Genetics, Leibniz University Hannover, Herrenhäuser Straße 2, 30419, Hannover, Germany.ORCID http://orcid.org/0000-0002-9297-4560
Johannes ThielLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Department of Molecular Genetics, Corrensstraße 3, 06466 Seeland OT, Gatersleben, Germany.ORCID http://orcid.org/0000-0003-3924-6940
Marc C HeuermannLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Department of Molecular Genetics, Corrensstraße 3, 06466 Seeland OT, Gatersleben, Germany.ORCID http://orcid.org/0000-0002-5520-5287
Markus KuhlmannLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Department of Molecular Genetics, Corrensstraße 3, 06466 Seeland OT, Gatersleben, Germany.ORCID http://orcid.org/0000-0003-3104-0825
Paride RizzoLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Department of Molecular Genetics, Corrensstraße 3, 06466 Seeland OT, Gatersleben, Germany.ORCID http://orcid.org/0000-0003-3802-2005
Rhonda C MeyerLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Department of Molecular Genetics, Corrensstraße 3, 06466 Seeland OT, Gatersleben, Germany.ORCID http://orcid.org/0000-0002-6210-4900
Steffen WagnerLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Department of Molecular Genetics, Corrensstraße 3, 06466 Seeland OT, Gatersleben, Germany.ORCID http://orcid.org/0000-0001-5979-6013
Jos H M SchippersLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Department of Molecular Genetics, Corrensstraße 3, 06466 Seeland OT, Gatersleben, Germany.ORCID http://orcid.org/0000-0001-7934-126X
Hans-Peter BraunInstitute of Plant Genetics, Leibniz University Hannover, Herrenhäuser Straße 2, 30419, Hannover, Germany.ORCID http://orcid.org/0000-0002-4459-9727
Thomas AltmannLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Department of Molecular Genetics, Corrensstraße 3, 06466 Seeland OT, Gatersleben, Germany. altmann@ipk-gatersleben.de.ORCID http://orcid.org/0000-0002-3759-360X

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 031B 0770B
6 · The paper itself

Abstract

Oilseed rape (Brassica napus) seeds are of major economic and nutritional value since they are rich in both oil and proteins, which accumulate predominantly in the embryonic cotyledons during the filling period. Developmental phases such as embryogenesis, seed filling, and maturation have been associated with specific changes in the transcriptional landscape and are controlled by interactions of regulatory components, particularly transcription factors and cis-regulatory elements. However, the global changes on the protein level remain largely elusive. Here, we investigated the dynamics of seed development by an integrative analysis of the seed transcriptome and proteome. Plants of the winter-type cultivar Express 617 were grown under controlled, field-like conditions in the IPK PhenoSphere, and developing seeds were collected for temporally and spatially resolved multi-omics analyses. The dataset covers five stages, from pre-storage to seed maturation, and includes spatial information on four dissected organs/tissues. It provides comprehensive insights into differentiation and developmental processes of the Brassica napus seed and may serve as starting point to select potentially important genes for detailed functional investigations.

Indexed as

Brassica napusProteomeSeedsTranscriptomeGene Expression Regulation, PlantPlant ProteinsProteomicsPlant ProteinsProteome

Identifiers

PMID40335559
PMCPMC12059035

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.