Evidence map›Paper›PMID 40333813›Full record

ArticlePLoS biology2025

A standardized nomenclature for the rods and cones of the vertebrate retina.

Tom Baden, Juan M Angueyra, Jenny M Bosten, Shaun P Collin, Bevil R Conway, Fabio Cortesi, Karin Dedek, Thomas Euler, Iñigo Novales Flamarique, Anna Franklin and 10 more

Abstract read
In one paragraph

Article in PLoS biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Perceptual and neural constraints on photometric measures of heterochromatic brightness.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. The molecular evolution of vertebrate organs.Nature ecology & evolution · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. The Effects of Light on Vertebrate Welfare: A Review.Animals : an open access journal from MDPI · 2025
    Review
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Tom BadenSussex Neuroscience, University of Sussex, Brighton, United Kingdom.ORCID 0000-0003-2808-4210
Juan M AngueyraDepartment of Biology and Brain and Behavior Institute, University of Maryland, College Park, Maryland, United States of America.
Jenny M BostenSussex Neuroscience, University of Sussex, Brighton, United Kingdom.
Shaun P CollinSchool of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Australia.
Bevil R ConwayLaboratory of Sensorimotor Research, National Eye Institute, Bethesda, Maryland, United States of America.
Fabio CortesiFaculty of Science, School of the Environment, University of Queensland, St Lucia, Australia.
Karin DedekNeurosensory/Animal Navigation, Carl von Ossietzky Universität Oldenburg, Oldenburg, Germany.
Thomas EulerCentre for Ophthalmology, University of Tübingen, Tübingen, Germany.
Iñigo Novales FlamariqueDepartment of Biological Sciences, Simon Fraser University, Burnaby, Canada.
Anna FranklinSussex Neuroscience, University of Sussex, Brighton, United Kingdom.
Silke HaverkampDepartment of Computational Neuroethology, Max Planck Institute for Neurobiology of Behavior - Caesar, Bonn, Germany.
Almut KelberDepartment of Biology, Lund University, Lund, Sweden.
Stephan C F NeuhaussDepartment of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.
Wei LiNational Eye Institute, Bethesda, Maryland, United States of America.
Robert J LucasCentre for Biological Timing and Division of Neuroscience, School of Biological Sciences, University of Manchester, Manchester, United Kingdom.
Daniel C OsorioSussex Neuroscience, University of Sussex, Brighton, United Kingdom.
Karthik ShekharDepartment of Chemical and Biomolecular Engineering, University of California Berkeley, Berkeley, California, United States of America.
Dario TommasiniDepartment of Chemical and Biomolecular Engineering, University of California Berkeley, Berkeley, California, United States of America.
Takeshi YoshimatsuDepartment of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Joseph C CorboDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, United States of America.

Funding

Elucidating the cis-regulatory grammar of human photoreceptorsR01EY030075 · NEI · WASHINGTON UNIVERSITY · PI CORBO, JOSEPH · 2020 to 2023
$2.2M
Targeting Nr2e3 to prevent photoreceptor degenerationR01EY033810 · NEI · WASHINGTON UNIVERSITY · PI JOSEPH CORBO, Vladimir Jivkov Kefalov · 2023 to 2026
$2.0M
NEI NIH HHS R01 EY030075NEI NIH HHS R01 EY033810Wellcome Trust
6 · The paper itself

Abstract

Vertebrate photoreceptors have been studied for well over a century, but a fixed nomenclature for referring to orthologous cell types across diverse species has been lacking. Instead, photoreceptors have been variably-and often confusingly-named according to morphology, presence/absence of 'rhodopsin', spectral sensitivity, chromophore usage, and/or the gene family of the opsin(s) they express. Here, we propose a unified nomenclature for vertebrate rods and cones that aligns with the naming systems of other retinal cell classes and that is based on the photoreceptor type's putative evolutionary history. This classification is informed by the functional, anatomical, developmental, and molecular identities of the neuron as a whole, including the expression of deeply conserved transcription factors required for development. The proposed names will be applicable across all vertebrates and indicative of the widest possible range of properties, including their postsynaptic wiring, and hence will allude to their common and species-specific roles in vision. Furthermore, the naming system is open-ended to accommodate the future discovery of as-yet unknown photoreceptor types.

Indexed as

RetinaRetinal Cone Photoreceptor CellsRetinal Rod Photoreceptor CellsTerminology as TopicVertebratesAnimalsHumansOpsinsOpsins

Identifiers

PMID40333813
PMCPMC12057980

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.