Evidence map›Paper›PMID 40327670›Full record

ArticlePLoS computational biology2025

Multiscale simulations that incorporate patient-specific neural network models of platelet calcium signaling predict diverse thrombotic outcomes under flow.

Kaushik N Shankar, Talid Sinno, Scott L Diamond

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kaushik N ShankarDepartment of Chemical and Biomolecular Engineering, Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0002-3989-6399
Talid SinnoDepartment of Chemical and Biomolecular Engineering, Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Scott L DiamondDepartment of Chemical and Biomolecular Engineering, Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0002-9791-2238

Funding

Blood Systems BiologyR01HL103419 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI DIAMOND, SCOTT L · 2010 to 2019
$7.4M
NHLBI NIH HHS R01 HL103419
6 · The paper itself

Abstract

During thrombosis, platelets rapidly deposit and activate on the vessel wall, driving conditions such as myocardial infarction and stroke. The complexity of thrombus formation in pathological flow geometries, along with patient-specific pharmacological responses, presents an opportunity for computational modeling to help deliver novel diagnostic and therapeutic insights. In the present study, we employed a multiscale 3D computational model that incorporates unique donor-derived neural networks (NNs) trained with platelet calcium mobilization traces under combinatorial exposure to 6 agonists (n = 10 donors). The 3D model comprises four modules: a donor-specific NN model for platelet calcium mobilization, a lattice kinetic Monte Carlo solver for tracking platelet motion and bonding, a finite volume method solver for modeling soluble agonist release and convective-diffusive transport, and a lattice Boltzmann method solver for predicting the blood velocity field. Simulations were conducted for platelets from individual blood donors under venous and arterial flow conditions on a defined collagen surface, examining the effects of inhibiting ADP and TXA2, as well as the influence of nitric oxide and prostacyclin. The results reveal significant individual variability in platelet responses, influencing simulated thrombus growth dynamics and emphasizing the importance of personalized models for predicting thrombotic behavior. This approach enables consideration of patient-specific platelet signaling, drug responses, and vascular geometry for predicting thrombotic episodes, essential for advancing precision medicine and improving patient outcomes in thrombotic conditions.

Indexed as

Blood PlateletsCalcium SignalingNeural Networks, ComputerThrombosisComputational BiologyComputer SimulationHumansModels, CardiovascularMonte Carlo Method

Identifiers

PMID40327670
PMCPMC12080932

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.