Evidence map›Paper›PMID 40326411›Full record

ArticleRNA biology2025

Cleavage sequence specificity of Nsp15.

John V McGuire, Scott Horowitz

Abstract read
In one paragraph

Article in RNA biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

John V McGuireDepartment of Chemistry & Biochemistry, Knoebel Institute for Healthy Aging, University of Denver, Denver, CO, USA.ORCID 0009-0001-7373-1600
Scott HorowitzDepartment of Chemistry & Biochemistry, Knoebel Institute for Healthy Aging, University of Denver, Denver, CO, USA.ORCID 0000-0002-1148-0105

Funding

Nucleic Acids Roles in Protein Folding and AggregationR35GM142442 · NIGMS · UNIVERSITY OF DENVER (COLORADO SEMINARY) · PI Scott Andrew Horowitz · 2021 to 2026
$2.4M
NIGMS NIH HHS R35 GM142442
6 · The paper itself

Abstract

Nsp15 is an EndoU nuclease that is partially responsible for SARS-CoV-2's ability to evade the immune system response. Despite its importance, the sequence specificity of Nsp15 remains difficult to fully determine. In this work, we use a systematic approach to measure Nsp15's sequence specificity by testing all 16 dinucleotides for cleavage activity. The results show a preference for uridine in the first dinucleotide position, but with varying specificity in the second position. Using Alphafold3 predictions to examine the structural basis of this specificity suggests important contacts 3' of the dinucleotide sequence as well as contacts to the dinucleotides that agree with the cleavage specificity.

Indexed as

EndoribonucleasesSARS-CoV-2Viral Nonstructural ProteinsBase SequenceCOVID-19HumansModels, MolecularRNA, ViralSubstrate SpecificityUridineEndoribonucleasesRNA, ViralUridineViral Nonstructural ProteinsAlphaFoldendoribonucleaseNon-structural protein 15Nsp15RNA degradationSARS-CoV-2sequence specificity

Identifiers

PMID40326411
PMCPMC12128668

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.