Evidence map›Paper›PMID 40324974›Full record

ArticleNature communications2025

Human coronavirus HKU1 spike structures reveal the basis for sialoglycan specificity and carbohydrate-promoted conformational changes.

Min Jin, Zaky Hassan, Zhijie Li, Ying Liu, Aleksandra Marakhovskaia, Alan H M Wong, Adam Forman, Mark Nitz, Michel Gilbert, Hai Yu and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Human coronavirus HKU1 neutralization by glycan receptor mimicry.bioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Review
  13. Virus evolution · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Min JinDepartment of Biochemistry, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0009-0009-1155-9890
Zaky HassanDepartment of Biochemistry, University of Toronto, Toronto, Ontario, Canada.
Zhijie LiDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0001-9283-6072
Ying LiuDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Aleksandra MarakhovskaiaDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Alan H M WongDepartment of Biochemistry, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0001-9763-6555
Adam FormanDepartment of Chemistry, University of Toronto, Toronto, Ontario, Canada.
Mark NitzDepartment of Chemistry, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0001-8078-2265
Michel GilbertHuman Health Therapeutics Research Centre, National Research Council Canada, Ottawa, Canada.ORCID http://orcid.org/0000-0002-0204-4408
Hai YuDepartment of Chemistry, University of California-Davis, Davis, CA, USA.ORCID http://orcid.org/0000-0002-4378-0532
Xi ChenDepartment of Chemistry, University of California-Davis, Davis, CA, USA.ORCID http://orcid.org/0000-0002-3160-614X
James M RiniDepartment of Biochemistry, University of Toronto, Toronto, Ontario, Canada. james.rini@utoronto.ca.ORCID http://orcid.org/0000-0002-0952-2409

Funding

Supplement: Exploring the biology of O-acetyl sialic acids using stable synthetic mimicsR01AI130684 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHEN, XI, VARKI, AJIT P · 2017 to 2020
$2.3M
NIAID NIH HHS R01 AI130684
6 · The paper itself

Abstract

The human coronavirus HKU1 uses both sialoglycoconjugates and the protein transmembrane serine protease 2 (TMPRSS2) as receptors. Carbohydrate binding leads to the spike protein up conformation required for TMPRSS2 binding, an outcome suggesting a distinct mechanism for driving fusion of the viral and host cell membranes. Nevertheless, the conformational changes promoted by carbohydrate binding have not been fully elucidated and the basis for HKU1's carbohydrate binding specificity remains unknown. Reported here are high resolution cryo-EM structures of the HKU1 spike protein trimer in its apo form and in complex with the carbohydrate moiety of a candidate carbohydrate receptor, the 9-O-acetylated GD3 ganglioside. The structures show that the spike monomer can exist in four discrete conformational states and that progression through them would promote the up conformation upon carbohydrate binding. We also show that a six-amino-acid insert is a determinant of HKU1's specificity for gangliosides containing a 9-O-acetylated α2-8-linked disialic acid moiety and that HKU1 shows weak affinity for the 9-O-acetylated sialic acids found on decoy receptors such as mucins.

Indexed as

GangliosidesSARS-CoV-2Spike Glycoprotein, CoronavirusCryoelectron MicroscopyHumansModels, MolecularProtein BindingProtein Conformationganglioside, GD3GangliosidesSpike Glycoprotein, Coronavirus

Identifiers

PMID40324974
PMCPMC12053599

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.