Evidence map›Paper›PMID 40323269›Full record

ArticleInvestigative ophthalmology & visual science2025

Systematic Ocular Phenotyping of Knockout Mouse Lines Identifies Genes Associated With Age-Related Corneal Dystrophies.

Andrew Briere, Peter Vo, Benjamin Yang, David Adams, Takanori Amano, Oana Amarie, Zorana Berberovic, Lynette Bower, Steve D M Brown, Samantha Burrill and 43 more

Abstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

53 authors.

Andrew BriereTouro University California College of Osteopathic Medicine, Vallejo, California, United States.
Peter VoCalifornia Northstate University College of Medicine, Elk Grove, California, United States.
Benjamin YangUniversity of California Davis School of Medicine, Sacramento, California, United States.
David AdamsThe Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.
Takanori AmanoRIKEN BioResource Research Center, Tsukuba, Japan.
Oana AmarieInstitute of Experimental Genetics, German Mouse Clinic, Helmholtz Zentrum München, Neuherberg, Germany.
Zorana BerberovicThe Centre for Phenogenomics, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.
Lynette BowerMouse Biology Program, University of California Davis, Davis, California, United States.
Steve D M BrownMary Lyon Centre, Medical Research Council, Harwell Institute, Harwell, United Kingdom.
Samantha BurrillThe Jackson Laboratory, Bar Harbor, Maine, United States.
Soo Young ChoDepartment of Molecular and Life Science, Hanyang University, Seoul, Republic of Korea.
Sharon Clementson-MobbsMary Lyon Centre, Medical Research Council, Harwell Institute, Harwell, United Kingdom.
Abigail D'souzaThe Centre for Phenogenomics, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.
Mohammad EskandarianThe Centre for Phenogenomics, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.
Ann M FlennikenThe Centre for Phenogenomics, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.
Helmut FuchsInstitute of Experimental Genetics, German Mouse Clinic, Helmholtz Zentrum München, Neuherberg, Germany.
Valerie Gailus-DurnerInstitute of Experimental Genetics, German Mouse Clinic, Helmholtz Zentrum München, Neuherberg, Germany.
Yann HéraultUniversité de Strasbourg, CNRS UMR 7104, INSERM U 1258, IGBMC, Institut Clinique de la Souris, PHENOMIN, Illkirch-Graffenstaden, France.
Martin Hrabe de AngelisInstitute of Experimental Genetics, German Mouse Clinic, Helmholtz Zentrum München, Neuherberg, Germany.
Shundan JinRIKEN BioResource Research Center, Tsukuba, Japan.
Russell JoynsonMary Lyon Centre, Medical Research Council, Harwell Institute, Harwell, United Kingdom.
Yeon Kyung KangCollege of Veterinary Medicine, Seoul National University, Seoul, Republic of Korea.
Haerim KimCollege of Veterinary Medicine, Seoul National University, Seoul, Republic of Korea.
Hiroshi MasuyaRIKEN BioResource Research Center, Tsukuba, Japan.
Hamid MezianeUniversité de Strasbourg, CNRS UMR 7104, INSERM U 1258, IGBMC, Institut Clinique de la Souris, PHENOMIN, Illkirch-Graffenstaden, France.
Ki-Hoan NamLaboratory Animal Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.
Hyuna NohCollege of Veterinary Medicine, Seoul National University, Seoul, Republic of Korea.
Lauryl M J NutterThe Centre for Phenogenomics, The Hospital for Sick Children, Toronto, Ontario, Canada.
Marcela PalkovaCzech Centre for Phenogenomics, Institute of Molecular Genetics of the Czech Academy of Sciences, 252 50 Vestec, Czech Republic.
Jan ProchazkaCzech Centre for Phenogenomics, Institute of Molecular Genetics of the Czech Academy of Sciences, 252 50 Vestec, Czech Republic.
Miles Joseph RaishbrookCzech Centre for Phenogenomics, Institute of Molecular Genetics of the Czech Academy of Sciences, 252 50 Vestec, Czech Republic.
Fabrice RietUniversité de Strasbourg, CNRS UMR 7104, INSERM U 1258, IGBMC, Institut Clinique de la Souris, PHENOMIN, Illkirch-Graffenstaden, France.
Jason SalazarMouse Biology Program, University of California Davis, Davis, California, United States.
Radislav SedlacekCzech Centre for Phenogenomics, Institute of Molecular Genetics of the Czech Academy of Sciences, 252 50 Vestec, Czech Republic.
Mohammed SelloumUniversité de Strasbourg, CNRS UMR 7104, INSERM U 1258, IGBMC, Institut Clinique de la Souris, PHENOMIN, Illkirch-Graffenstaden, France.
Kyoung Yul SeoDepartment of Ophthalmology, Institute of Vision Research, Yonsei University College of Medicine, Seoul, Republic of Korea.
Je Kyung SeongLaboratory of Developmental Biology and Genomics, Research Institute of Veterinary Science, BK21 Plus Program for Advanced Veterinary Science, College of Veterinary Medicine and Interdisciplinary Program for Bioinformatics, Seoul National University, Seoul, Republic of Korea.
Hae-Sol ShinDepartment of Ophthalmology, Institute of Vision Research, Yonsei University College of Medicine, Seoul, Republic of Korea.
Toshihiko ShiroishiRIKEN BioResource Research Center, Tsukuba, Japan.
Michelle StewartMary Lyon Centre, Medical Research Council, Harwell Institute, Harwell, United Kingdom.
Karen SvensonThe Jackson Laboratory, Bar Harbor, Maine, United States.
Masaru TamuraRIKEN BioResource Research Center, Tsukuba, Japan.
Heather TolentinoMouse Biology Program, University of California Davis, Davis, California, United States.
Sara WellsMary Lyon Centre, Medical Research Council, Harwell Institute, Harwell, United Kingdom.
Wolfgang WurstInstitute of Developmental Genetics, Helmholtz Zentrum München, Neuherberg, Germany.
Atsushi YoshikiRIKEN BioResource Research Center, Tsukuba, Japan.
Louise LanoueMouse Biology Program, University of California Davis, Davis, California, United States.
K C Kent LloydMouse Biology Program, University of California Davis, Davis, California, United States.
Brian C LeonardDepartment of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California Davis, Davis, California, United States.
Michel J RouxUniversité de Strasbourg, CNRS UMR 7104, INSERM U 1258, IGBMC, Institut Clinique de la Souris, PHENOMIN, Illkirch-Graffenstaden, France.
Colin McKerlieThe Centre for Phenogenomics, The Hospital for Sick Children, Toronto, Ontario, Canada.
Ala MoshiriDepartment of Ophthalmology & Vision Science, School of Medicine, University of California Davis, Sacramento, California, United States.
International Mouse Phenotyping Consortium

Funding

UC Davis Clinical and Translational Science CenterUL1TR001860 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KENYON, NICHOLAS J., LYLES, COURTNEY REES · 2016 to 2025
$47.3M
KOMP Phase II Mouse Production and CryopreservationU42OD011175 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LLOYD, KC KENT · 2012 to 2015
$18.9M
KOMP Phase II Mouse PhenotypingU54HG006364 · NHGRI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LLOYD, KC KENT · 2011 to 2015
$16.3M
UC Davis CTSC TL1 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility MentorshipTL1TR001861 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MEDICI, VALENTINA · 2016 to 2025
$4.7M
The Role of ARAP1 in Retinal Photoreceptor HomeostasisK08EY027463 · NEI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MOSHIRI, ALA · 2017 to 2021
$1.0M
Interrogation and Interpretation of Common Fund Data Sets to Identify Novel Ocular Disease GenesR03OD032622 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MOSHIRI, ALA · 2021 to 2021
$315k
NCATS NIH HHS TL1 TR001861NCATS NIH HHS UL1 TR001860NEI NIH HHS K08 EY027463NHGRI NIH HHS U54 HG006364NIH HHS R03 OD032622NIH HHS U42 OD011175
6 · The paper itself

Abstract

Purpose: This study investigates genes contributing to late-adult corneal dystrophies (LACDs) in aged mice, with potential implications for late-onset corneal dystrophies (CDs) in humans. Methods: The International Mouse Phenotyping Consortium (IMPC) database, containing data from 8901 knockout mouse lines, was filtered to include late-adult mice (49+ weeks) with significant (P < 0.0001) CD phenotypes. Candidate genes were mapped to human orthologs using the Mouse Genome Informatics group, with expression analyzed via PLAE and a literature review for prior CD associations. Comparative analyses of LACD genes from IMPC and established human CD genes from IC3D included protein interactions (STRING), biological processes (PANTHER), and molecular pathways (KEGG). Results: Analysis identified 14 genes linked to late-adult abnormal corneal phenotypes. Of these, 2 genes were previously associated with CDs in humans, while 12 were novel. Seven of the 14 genes (50%) were expressed in the human cornea based on single-cell transcriptomics. Protein-protein interactions via STRING showed several significant interactions with known human CD genes. PANTHER analysis identified six biological processes shared with established human CD genes. Two genes (Rgs2 and Galnt9) were involved in pathways related to human corneal diseases, including cGMP-PKG signaling, mucin-type O-glycan biosynthesis, and oxytocin signaling. Other candidates were implicated in pathways such as pluripotency of stem cells, MAPK signaling, WNT signaling, actin cytoskeleton regulation, and cellular senescence. Conclusions: This study identified 14 genes linked to LACD in knockout mice, 12 of which are novel in corneal biology. These genes may serve as potential therapeutic targets for treating corneal diseases in aging human populations.

Indexed as

AgingCorneal Dystrophies, HereditaryAnimalsDisease Models, AnimalHumansMiceMice, KnockoutPhenotype

Identifiers

PMID40323269
PMCPMC12060066

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.