Evidence map›Paper›PMID 40322924›Full record

ArticleNucleic acids research2025

EBI Search: providing discovery tools for biological metadata in 2025.

Matthew Pearce, Prasad Basutkar, Renato Caminha Juaçaba Neto, Vijay Venkatesh Subramoniam, Kelsey Neis, Iva Tutis, Henning Hermjakob

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. ACP4 Variants in Hypoplastic Amelogenesis Imperfecta.Calcified tissue international · 2026
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Matthew PearceEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.ORCID 0000-0001-7037-2422
Prasad BasutkarEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.ORCID 0000-0001-8616-2585
Renato Caminha Juaçaba NetoEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.ORCID 0000-0002-0626-984X
Vijay Venkatesh SubramoniamEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.ORCID 0009-0000-1394-2513
Kelsey NeisEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.ORCID 0000-0002-6113-776X
Iva TutisEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.ORCID 0009-0005-5908-5891
Henning HermjakobEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.ORCID 0000-0001-8479-0262

Funding

Pathogen Data NetworkU24AI183840 · NIAID · SWISS INSTITUTE OF BIOINFORMATICS · PI Christophe Dessimoz, Sam Fo Halabi · 2024 to 2026
$9.1M
BY-COVID 101046203EarlyCause 848158EMBL-EBIEOSC-Life 824087National Institute of Allergy and Infectious Diseases U24AI183840NIAID NIH HHS U24 AI183840NIH HHS
6 · The paper itself

Abstract

The data resources provided by the European Bioinformatics Institute (EMBL-EBI) cover major areas of biological and biomedical research, giving free and open access to users ranging from expert to casual level. The EBI Search engine provides a unified metadata search engine across these resources. It provides a full-text search engine across over 6.5 billion data items, accessed through a user-friendly website and an OpenAPI-compliant programmatic interface. Here, we discuss recent developments and improvements in the service.

Indexed as

Computational BiologyMetadataSearch EngineSoftwareHumansInternetUser-Computer Interface

Identifiers

PMID40322924
PMCPMC12230726

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.