Evidence map›Paper›PMID 40321998›Full record

ArticleBiomedical optics express2025

Variation of optical properties of mouse brain using an optical clearing agent: experimental and simulation approaches.

Saeed Ziaee, Mohammad Ali Ansari, Seyyede Sarvenaz Khatami, Behnam Shariati B K, Vahid Ghotbi Maleki, Samad Nejad Ebrahimi, Valery V Tuchin

Abstract read
In one paragraph

Article in Biomedical optics express, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Saeed ZiaeeLaser and Plasma Research Institute, Shahid Beheshti University, Tehran 19839 69411, Iran.ORCID https://orcid.org/0009-0000-7433-1935
Mohammad Ali AnsariLaser and Plasma Research Institute, Shahid Beheshti University, Tehran 19839 69411, Iran.ORCID https://orcid.org/0000-0003-4934-1300
Seyyede Sarvenaz KhatamiLaser and Plasma Research Institute, Shahid Beheshti University, Tehran 19839 69411, Iran.
Behnam Shariati B KLaser and Plasma Research Institute, Shahid Beheshti University, Tehran 19839 69411, Iran.
Vahid Ghotbi MalekiDepartment of Phytochemistry, Medicinal Plants and Drugs Research Institute, Shahid Beheshti University, Tehran 19839 69411, Iran.
Samad Nejad EbrahimiDepartment of Phytochemistry, Medicinal Plants and Drugs Research Institute, Shahid Beheshti University, Tehran 19839 69411, Iran.
Valery V TuchinInstitute of Physics and Science Medical Center, Saratov State University, 83 Astrakhanskaya str., Saratov 410012, Russia.ORCID https://orcid.org/0000-0001-7479-2694

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For optical diagnosis and therapy in medicine, tracking changes in tissue refractive index (RI), absorption, and scattering coefficient is important. These characteristics may be measured using a variety of techniques. Examples of simulation and experimentation techniques for determining optical parameters are inverse Monte Carlo (IMC) simulation, integrating sphere spectroscopy (ISS), and diffuse reflectance spectroscopy (DRS). The depth of optical measurements is limited by tissue light attenuation in all methods. Using optical clearing agents (OCAs) is a common method to increase optical depth and reduce light scattering in biological tissues. Thus, optical measurement techniques employing new (OCAs) can potentially achieve greater efficiency than traditional agents. This study aims to measure the optical properties of an unsliced mouse brain in the visible spectrum using an OCA composition to clear the tissue. The mouse brain model is useful for developing neuroimaging techniques and optical monitoring of brain activity. In this study, DRS, ISS, and IMC are used to analyze the changes in the RI, absorption, and scattering coefficients of the unsliced mouse brain. A fluorescence test was additionally conducted to evaluate the efficacy of the introduced OCA in comparison to glycerol. The findings and OCA described in this study may be beneficial in optical neurostimulation and brain disease treatments.

Identifiers

PMID40321998
PMCPMC12047726

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.