Evidence map›Paper›PMID 40317166›Full record

ArticleGenome biology and evolution2025

Genome Evolution of Two Intertidal Sargassum Species (S. fusiforme and S. thunbergii) and Their Response to Abiotic Stressors.

Hocheol Kim, Jihoon Jo, Ji Hyun Yang, Khaoula Ettahi, Yukyoung Jeon, Jundong Yu, Debashish Bhattacharya, Jong Hwan Kwak, Hwan Su Yoon

Abstract read
In one paragraph

Article in Genome biology and evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Hocheol KimDepartment of Biological Sciences, Sungkyunkwan University, Suwon 16419, Korea.ORCID 0000-0003-2717-8311
Jihoon JoDepartment of Biological Sciences, Sungkyunkwan University, Suwon 16419, Korea.ORCID 0000-0003-1238-7882
Ji Hyun YangDepartment of Biological Sciences, Sungkyunkwan University, Suwon 16419, Korea.
Khaoula EttahiDepartment of Biological Sciences, Sungkyunkwan University, Suwon 16419, Korea.
Yukyoung JeonSchool of Pharmacy, Sungkyunkwan University, Suwon 16419, Korea.
Jundong YuRacing Laboratory, Korea Racing Authority, Gachon 13822, Korea.
Debashish BhattacharyaDepartment of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ 08901, USA.ORCID 0000-0003-0611-1273
Jong Hwan KwakSchool of Pharmacy, Sungkyunkwan University, Suwon 16419, Korea.ORCID 0000-0002-8327-3703
Hwan Su YoonDepartment of Biological Sciences, Sungkyunkwan University, Suwon 16419, Korea.ORCID 0000-0001-9507-0105

Funding

Cooperative Research Program for Agriculture Science and Technology Development RS-2023-00231243Korea Institute of Marine Science and Technology Promotion RS-2018-KS183973Korea Institute of Marine Science and Technology Promotion RS-2021-KS211476National Research Foundation of Korea RS-2021-NR058805National Research Foundation of Korea RS-2022-NR068987National Research Foundation of Korea RS-2022-NR070837Rural Development Administration, Republic of KoreaUSDA National Institute of Food and Agriculture NJ01180
6 · The paper itself

Abstract

Sargassum fusiforme and Sargassum thunbergii are ecologically and commercially important seaweeds that thrive in intertidal zones and are frequently exposed to extreme variation in environmental stress. Despite their importance, limited genomic information exists for these species, which hinders a comprehensive understanding of the evolution and adaptation of the genus Sargassum to marine coastal habitats. Two Sargassum genomes were generated in this study. The genome sizes of S. fusiforme and S. thunbergii were 438 and 376 Mbp, respectively, which are larger than the published genomes of the brown seaweed group, Ectocarpales. Expansion of the Sargassum genomes was significantly explained by the spread of transposable elements (TEs). Additionally, extensive gene duplications and their diversification occurred particularly through tandem, proximal, and dispersed duplications, which likely played an important role in response to environmental stress. Differentially expressed gene analysis under ambient and desiccation stress conditions confirmed that some duplicated genes respond to stress. We identified enhanced disease susceptibility 1 (EDS1) genes that promote salicylic acid (SA) biosynthesis, and their expansion is likely linked to TEs. We also confirmed the potential role of EDS1 by analyzing its subcellular localization (in Arabidopsis thaliana) and quantified the increased SA levels under desiccation conditions. This study demonstrates that the genomic evolution has played a critical role in allowing S. fusiforme and S. thunbergii to adapt to harsh intertidal conditions. The genomic resources of Sargassum species provided here will be instrumental in advancing future research, aiding in the understanding of adaptive evolution in brown algae.

Indexed as

Evolution, MolecularSargassumStress, PhysiologicalDNA Transposable ElementsGene DuplicationPhylogenyDNA Transposable Elementsdesiccation stressgenome evolutionsalicylic acidSargassum fusiformeSargassum thunbergii

Identifiers

PMID40317166
PMCPMC12089773

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.