Evidence map›Paper›PMID 40315155›Full record

ArticleJournal of chemical theory and computation2025

DeePMD-kit v3: A Multiple-Backend Framework for Machine Learning Potentials.

Jinzhe Zeng, Duo Zhang, Anyang Peng, Xiangyu Zhang, Sensen He, Yan Wang, Xinzijian Liu, Hangrui Bi, Yifan Li, Chun Cai and 37 more

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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  15. The CP2K Program Package Made Simple.The journal of physical chemistry. B · 2026
    Article
  16. Review
  17. Substantial planar plastic anisotropy in inorganic MgProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

47 authors.

Jinzhe ZengSchool of Artificial Intelligence and Data Science, Unversity of Science and Technology of China, Hefei 230026, P. R. China.ORCID 0000-0002-1515-8172
Duo ZhangAI for Science Institute, Beijing 100080, P. R. China.
Anyang PengAI for Science Institute, Beijing 100080, P. R. China.
Xiangyu ZhangState Key Lab of Processors, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100871, P.R. China.
Sensen HeBaidu Inc., Beijing 100085, P. R. China.
Yan WangState Key Lab of Processors, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100871, P.R. China.
Xinzijian LiuDP Technology, Beijing 100080, P. R. China.
Hangrui BiDepartment of Computer Science, University of Toronto, Toronto, Ontario M5S 1A1, Canada.
Yifan LiDepartment of Chemistry, Princeton University, Princeton, New Jersey 08540, United States.
Chun CaiAI for Science Institute, Beijing 100080, P. R. China.
Chengqian ZhangAcademy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, P. R. China.
Yiming DuState Key Lab of Processors, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100871, P.R. China.
Jia-Xin ZhuState Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P.R. China.ORCID 0000-0002-3471-4728
Pinghui MoCollege of Integrated Circuits, Hunan University, Changsha 410082, P.R. China.
Zhengtao HuangState Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Center for Smart Materials and Device Integration, School of Material Science and Engineering, Wuhan University of Technology, Wuhan 430070, P.R. China.
Qiyu ZengCollege of Science, National University of Defense Technology, Changsha 410073, P.R. China.
Shaochen ShiByteDance Research, Beijing 100098, P. R. China.
Xuejian QinNingbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, Ningbo 315201, P.R. China.
Zhaoxi YuKey Laboratory of Theoretical and Computational Photochemistry of Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, P. R. China.
Chenxing LuoDepartment of Geosciences, Princeton University, Princeton, New Jersey 08544, United States.ORCID 0000-0003-4116-6851
Ye DingDP Technology, Beijing 100080, P. R. China.
Yun-Pei LiuLaboratory of AI for Electrochemistry (AI4EC), IKKEM, Xiamen 361005, Fujian, P. R. China.
Ruosong ShiGraduate School of China Academy of Engineering Physics, Beijing 100088, P. R. China.
Zhenyu WangKey Laboratory of Material Simulation Methods and Software of Ministry of Education, College of Physics, Jilin University, Changchun 130012, P.R. China.ORCID 0009-0007-7927-6753
Sigbjørn Løland BoreDepartment of Chemistry and Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, 0315 Oslo, Norway.ORCID 0000-0002-8620-4885
Junhan ChangDP Technology, Beijing 100080, P. R. China.
Zhe DengCollege of Chemistry and Molecular Engineering, Peking University, Beijing 100871, P. R. China.
Zhaohan DingDP Technology, Beijing 100080, P. R. China.
Siyuan HanState Key Laboratory for Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China.
Wanrun JiangAI for Science Institute, Beijing 100080, P. R. China.
Guolin KeDP Technology, Beijing 100080, P. R. China.
Zhaoqing LiuCollege of Chemistry and Molecular Engineering, Peking University, Beijing 100871, P. R. China.ORCID 0009-0007-8286-9090
Denghui LuDepartment of Mechanics and Engineering Science, and HEDPS and CAPT, College of Engineering, Peking University, Beijing 100871, P. R. China.
Koki MuraokaDepartment of Chemical System Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.ORCID 0000-0003-1830-7978
Hananeh OliaeiDepartment of Mechanical Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States.
Anurag Kumar SinghDepartment of Data Science, Indian Institute of Technology Palakkad, Kerala 678623, India.
Haohui QueShanghai Astronomical Observatory, Chinese Academy of Sciences, Shanghai 200030, P.R. China.
Weihong XuLaboratory of AI for Electrochemistry (AI4EC), IKKEM, Xiamen 361005, Fujian, P. R. China.
Zhangmancang XuInternational School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, P. R. China.
Yong-Bin ZhuangChaire de Simulation à l'Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland.ORCID 0000-0001-5182-8084
Jiayu DaiCollege of Science, National University of Defense Technology, Changsha 410073, P.R. China.ORCID 0000-0001-7423-7500
Timothy J GieseLaboratory for Biomolecular Simulation Research, Institute for Quantitative Biomedicine and Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, United States.ORCID 0000-0002-0653-9168
Weile JiaState Key Lab of Processors, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100871, P.R. China.
Ben XuGraduate School of Chinese Academy of Engineering Physics, Beijing 100088, P.R. China.
Darrin M YorkLaboratory for Biomolecular Simulation Research, Institute for Quantitative Biomedicine and Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, United States.ORCID 0000-0002-9193-7055
Linfeng ZhangAI for Science Institute, Beijing 100080, P. R. China.ORCID 0000-0002-8470-5846
Han WangNational Key Laboratory of Computational Physics, Institute of Applied Physics and Computational Mathematics, Fenghao East Road 2, Beijing 100094, P.R. China.ORCID 0000-0001-5623-1148

Funding

Next-generation integrated quantum force fields for biomedical applicationsR01GM107485 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI Darrin M York · 2015 to 2026
$3.8M
NIGMS NIH HHS R01 GM107485
6 · The paper itself

Abstract

In recent years, machine learning potentials (MLPs) have become indispensable tools in physics, chemistry, and materials science, driving the development of software packages for molecular dynamics (MD) simulations and related applications. These packages, typically built on specific machine learning frameworks, such as TensorFlow, PyTorch, or JAX, face integration challenges when advanced applications demand communication across different frameworks. The previous TensorFlow-based implementation of the DeePMD-kit exemplified these limitations. In this work, we introduce DeePMD-kit version 3, a significant update featuring a multibackend framework that supports TensorFlow, PyTorch, JAX, and PaddlePaddle backends, and demonstrate the versatility of this architecture through the integration of other MLP packages and of differentiable molecular force fields. This architecture allows seamless back-end switching with minimal modifications, enabling users and developers to integrate DeePMD-kit with other packages using different machine learning frameworks. This innovation facilitates the development of more complex and interoperable workflows, paving the way for broader applications of MLPs in scientific research.

Identifiers

PMID40315155
PMCPMC12213307

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.