Evidence map›Paper›PMID 40312511›Full record

ArticleNature methods2025

CarboTag: a modular approach for live and functional imaging of plant cell walls.

Maarten Besten, Milan Hendriksz, Lucile Michels, Bénédicte Charrier, Elwira Smakowska-Luzan, Dolf Weijers, Jan Willem Borst, Joris Sprakel

Abstract read
In one paragraph

Article in Nature methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
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  5. The mechanical properties ofScience advances · 2026
    Article
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  8. Year in review 2025.Nature methods · 2026
    Article
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  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Maarten BestenLaboratory of Biochemistry, Wageningen University and Research, Wageningen, the Netherlands.ORCID http://orcid.org/0000-0001-5823-2320
Milan HendrikszLaboratory of Biochemistry, Wageningen University and Research, Wageningen, the Netherlands.ORCID http://orcid.org/0009-0001-9046-9536
Lucile MichelsLaboratory of Biochemistry, Wageningen University and Research, Wageningen, the Netherlands.
Bénédicte CharrierInstitute of Function Genomics in Lyon (IGFL), UMR5242, ENS de Lyon, CNRS, UCBL, Lyon, France.
Elwira Smakowska-LuzanLaboratory of Biochemistry, Wageningen University and Research, Wageningen, the Netherlands.
Dolf WeijersLaboratory of Biochemistry, Wageningen University and Research, Wageningen, the Netherlands.ORCID http://orcid.org/0000-0003-4378-141X
Jan Willem BorstLaboratory of Biochemistry, Wageningen University and Research, Wageningen, the Netherlands.
Joris SprakelLaboratory of Biochemistry, Wageningen University and Research, Wageningen, the Netherlands. joris.sprakel@wur.nl.ORCID http://orcid.org/0000-0001-6532-4514

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101000981EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101055148
6 · The paper itself

Abstract

Plant cells are contained within a rigid network of cell walls. Cell walls serve as a structural material and a crucial signaling hub vital to all aspects of the plant life cycle. However, many features of the cell wall remain enigmatic, as it has been challenging to map its functional properties in live plants at subcellular resolution. Here, we introduce CarboTag, a modular toolbox for live functional imaging of plant walls. CarboTag uses a small molecular motif, a pyridine boronic acid, that directs its cargo to the cell wall. We designed a suite of cell wall imaging probes based on CarboTag in various colors for multiplexing. Additionally, we developed new functional reporters for live quantitative imaging of key cell wall characteristics: network porosity, cell wall pH and the presence of reactive oxygen species. CarboTag paves the way for dynamic and quantitative mapping of cell wall responses at subcellular resolution.

Indexed as

ArabidopsisCell WallPlant CellsBoronic AcidsHydrogen-Ion ConcentrationPyridinesReactive Oxygen SpeciesBoronic AcidsPyridinesReactive Oxygen Species

Identifiers

PMID40312511
PMCPMC12074989

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.