Evidence map›Paper›PMID 40311114›Full record

ArticleJournal of chemical information and modeling2025

Machine Learning Classification of Chirality and Optical Rotation Using a Simple One-Hot Encoded Cartesian Coordinate Molecular Representation.

Yilin Zhou, Haoran Zhu, Yijie Yuan, Ziyu Song, Brendan C Mort

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yilin ZhouCenter for Integrated Research Computing, University of Rochester, Rochester, New York 14627, United States.
Haoran ZhuCenter for Integrated Research Computing, University of Rochester, Rochester, New York 14627, United States.
Yijie YuanCenter for Integrated Research Computing, University of Rochester, Rochester, New York 14627, United States.
Ziyu SongCenter for Integrated Research Computing, University of Rochester, Rochester, New York 14627, United States.
Brendan C MortCenter for Integrated Research Computing, University of Rochester, Rochester, New York 14627, United States.ORCID 0000-0001-5084-8091

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Absolute stereochemical configurations and optical rotations were computed for 121,416 molecular structures from the QM9 quantum chemistry data set using density functional theory. A representation for the molecules was developed using Cartesian coordinate geometries and encoded atom types to serve as input for various machine learning algorithms. Classifiers were developed and trained to predict the chirality and signs of optical rotations using a variety of machine learning methods. These methods are compared, and the results demonstrate that machine learning is a viable tool for making predictions of the stereochemical properties of molecules.

Indexed as

Machine LearningAlgorithmsModels, MolecularOptical RotationQuantum TheoryStereoisomerism

Identifiers

PMID40311114
PMCPMC12076508

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.