Evidence map›Paper›PMID 40310238›Full record

ArticleJournal of chemical theory and computation2025

NaCl Dissociation Explored Through Predictive Power Path Sampling Analysis.

Konrad Wilke, Shuxia Tao, Sofia Calero, Anders Lervik, Titus S van Erp

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Konrad WilkeMaterials Simulation & Modelling, Department of Applied Physics and Science Education, Eindhoven University of Technology, 5600 MB, Eindhoven, The Netherlands.ORCID 0009-0007-2724-6771
Shuxia TaoMaterials Simulation & Modelling, Department of Applied Physics and Science Education, Eindhoven University of Technology, 5600 MB, Eindhoven, The Netherlands.ORCID 0000-0002-3658-8497
Sofia CaleroMaterials Simulation & Modelling, Department of Applied Physics and Science Education, Eindhoven University of Technology, 5600 MB, Eindhoven, The Netherlands.ORCID 0000-0001-9535-057X
Anders LervikDepartment of Chemistry, Faculty of Natural Sciences and Technology, NTNU, Norwegian University of Science and Technology, 7941 Trondheim, Norway.
Titus S van ErpDepartment of Chemistry, Faculty of Natural Sciences and Technology, NTNU, Norwegian University of Science and Technology, 7941 Trondheim, Norway.ORCID 0000-0001-6600-6657

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Utilizing the replica exchange transition interface sampling (RETIS) technique, we simulated the dynamics of sodium chloride dissociation in water. Subsequently, the resulting trajectories were analyzed using predictive power analysis (PPA), enabling the identification and quantification of collective variables (CVs) capable of forecasting the reaction occurrence. We improved the robustness of the PPA method by incorporating the Savitzky-Golay (SG) filter on integrated histograms, effectively avoiding the limitations associated with binning. Applying this adapted PPA method, the previously designed solvent parameters and distances from the index invariant distance matrix were assessed. This revealed that the sixth closest oxygen to sodium serves as an equally effective predictor as the best complex solvent parameter. The latter, however, required more knowledge and human intuition as an input for its design, while the former provided such intuition purely as an output. Through a comparable analysis, the chloride solvation shell appears to contain less predictive information. Employing a linear combination of several CVs can further enhance predictability, albeit at the expense of a reduced human interpretability.

Identifiers

PMID40310238
PMCPMC12079800

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.