Evidence map›Paper›PMID 40307559›Full record

ArticleNature2025

TIR domains produce histidine-ADPR as an immune signal in bacteria.

Dziugas Sabonis, Carmel Avraham, Renee B Chang, Allen Lu, Ehud Herbst, Arunas Silanskas, Deividas Vilutis, Azita Leavitt, Erez Yirmiya, Hunter C Toyoda and 7 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Balancing of immune activation and suppression during phage infection.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Phage RyR-domain proteins degrade ADPR-based immune signals and fuel NADbioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. TIR-like NADases act in bacterial immunity and the RNA vault.bioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
  12. Molecular mechanisms of plant NLR activation and signalling.The Plant journal : for cell and molecular biology · 2026
    Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. TheProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Dziugas Sabonis *Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
Carmel Avraham *Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-4288-0355
Renee B Chang *Department of Microbiology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-6298-7005
Allen LuDepartment of Microbiology, Harvard Medical School, Boston, MA, USA.
Ehud HerbstDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-5570-5804
Arunas SilanskasInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
Deividas VilutisInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
Azita LeavittDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Erez YirmiyaDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Hunter C ToyodaDepartment of Microbiology, Harvard Medical School, Boston, MA, USA.
Audrone RuksenaiteInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
Mindaugas ZarembaInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.ORCID 0000-0002-8606-6304
Ilya OstermanDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0001-7748-980X
Gil AmitaiDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-2954-2503
Philip J KranzuschDepartment of Microbiology, Harvard Medical School, Boston, MA, USA. philip_kranzusch@dfci.harvard.edu.ORCID 0000-0002-4943-733X
Rotem SorekDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel. rotem.sorek@weizmann.ac.il.ORCID 0000-0002-3872-4982
Giedre TamulaitieneInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania. giedre.tamulaitiene@bti.vu.lt.ORCID 0000-0002-9794-3544

Funding

Cancer Research Fund Postdoctoral FellowshipHorizon 2020 programme of the European Commission
6 · The paper itself

Abstract

Toll/interleukin-1 receptor (TIR) domains are central components of pattern recognition immune proteins across all domains of life

Indexed as

Bacterial ProteinsHistidineSignal TransductionBacteriophagesCrystallography, X-RayLigandsModels, MolecularProtein DomainsViral ProteinsBacterial ProteinsHistidineLigandsViral Proteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.