ArticleNature2025
Diet outperforms microbial transplant to drive microbiome recovery in mice.
Abstract read
In one paragraph
Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
36 citing papers in PubMed.
- From gut dysbiosis to eubiosis: understanding microbiome recovery as an ecological process.Gut microbes · 2026Review
- Towards optimizing the host response to biotics: a report of an International Scientific Association for Probiotics and Prebiotics working group.Gut microbes · 2026Article
- The JNK2-microbiome axis modulates gut barrier integrity through microbial acetate.Gut microbes · 2026Article
- Microbiome ecology and antibiotic treatment failure: resistance spread, microbial competition and community engineering.Microbial genomics · 2026Review
- Article
- Gut Metabolism Links Precision Nutrition, Exercise, and Healthspan in Drosophila melanogaster.Aging cell · 2026Article
- Human inflammatory bowel disease-on-a-chip for modelling disease progression, cancer initiation and sex-specific effects.Nature biomedical engineering · 2026Article
- Review
- Dynamical Systems-Constrained Metabolic Modeling Enables Forecasting of Host-Microbiome Dynamics.bioRxiv : the preprint server for biology · 2026Article
- Inflammation and Colorectal Cancer Pathogenesis: Molecular, Immunological, and Environmental Features for Therapy Response and Resistances.International journal of molecular sciences · 2026Review
- Harnessing the Microbiome in Cancer Immunotherapy: Regulation, Prediction, and Therapeutic Targeting.Annual review of immunology · 2026Review
- The Role of Gut Microbiome in Prostate Cancer: Current Evidence and Emerging Opportunities.Cancers · 2026Review
- Gut microecology empowers cancer immunotherapy: commensal microbiota-mediated mechanisms and translational prospects of PD-1/PD-L1 therapy.Cancer biology & medicine · 2026Review
- Polysaccharides from the Cherry Peel ofFoods (Basel, Switzerland) · 2026Article
- Sugar ABC transporter repertoires predict ecological dynamics in gut microbiome communities.Research square · 2026Article
- Decoding the gut interactome after severe trauma: from molecular dialogue to integrative treatment strategies.Frontiers in microbiology · 2026Review
- Detrimental and Beneficial Diets Regulate Acute Pancreatitis Through Convergent Gut Microbiota Pathways.Journal of inflammation research · 2026Review
- Colorectal cancer-derived extracellular vesicles: at the crossroads of the tumor microenvironment and gut microbiota.Frontiers in immunology · 2026Review
- Advances in Traditional Chinese Medicine interventions for influenza A based on the gut-lung axis: modern evidence for the exterior-interior relationship between the lung and large intestine.Frontiers in medicine · 2026Review
- Statistical design of a synthetic microbiome that suppresses diverse gut pathogens.bioRxiv : the preprint server for biology · 2025Article
Corrections and comments
- Update of
Authors and funding
15 authors.
M S KennedyMedical Scientist Training Program, Pritzker School of Medicine, The University of Chicago, Chicago, IL, USA.ORCID 0000-0001-6472-2182
A FreiburgerDivision of Data Science and Learning, Argonne National Laboratory, Lemont, IL, USA.ORCID 0000-0002-7288-535X
M CooperDepartment of Medicine, The University of Chicago, Chicago, IL, USA.
K BeilsmithDivision of Data Science and Learning, Argonne National Laboratory, Lemont, IL, USA.ORCID 0000-0003-2778-299X
M L St GeorgeDepartment of Medicine, The University of Chicago, Chicago, IL, USA.ORCID 0000-0003-4262-5941
M KalskiDepartment of Medicine, The University of Chicago, Chicago, IL, USA.
C ChamDepartment of Medicine, The University of Chicago, Chicago, IL, USA.ORCID 0000-0001-7135-949X
A GuzzettaDepartment of Pathology, The University of Chicago, Chicago, IL, USA.ORCID 0000-0002-8809-7438
S C NgMicrobiota I-Center (MagIC), Department of Medicine and Therapeutics, LKS Institute of Health Science, Institute of Digestive Disease, Center for Gut Microbiota Research, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID 0000-0002-6850-4454
F K ChanMicrobiota I-Center (MagIC), Department of Medicine and Therapeutics, LKS Institute of Health Science, Institute of Digestive Disease, Center for Gut Microbiota Research, The Chinese University of Hong Kong, Hong Kong SAR, China.
O DeLeonDepartment of Medicine, The University of Chicago, Chicago, IL, USA.
D RubinInflammatory Bowel Disease Center, University of Chicago Medicine, Chicago, IL, USA.ORCID 0000-0001-5647-1723
C S HenryDivision of Data Science and Learning, Argonne National Laboratory, Lemont, IL, USA.
J BergelsonDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, USA.
E B ChangDepartment of Medicine, The University of Chicago, Chicago, IL, USA. echang@bsd.uchicago.edu.ORCID 0000-0001-5972-8248
Funding
MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1MResearch Training in Digestive Health, Diseases, and NutritionT32DK007074 · NIDDK · UNIVERSITY OF CHICAGO · PI EUGENE B CHANG · 1986 to 2026
$11.3MHost and microbial basis of human ulcerative colitis and pouchitis: Identification, role, mechanisms, and resource development of host susceptibility and pathobiont factorsRC2DK122394 · NIDDK · UNIVERSITY OF CHICAGO · PI CHANG, EUGENE B · 2019 to 2023
$10.2MNIDDK NIH HHS RC2 DK122394NIDDK NIH HHS T32 DK007074NIGMS NIH HHS T32 GM007281
Abstract
A high-fat, low-fibre Western-style diet (WD) induces microbiome dysbiosis characterized by reduced taxonomic diversity and metabolic breadth
Indexed as
Diet, WesternDysbiosisFecal Microbiota TransplantationGastrointestinal MicrobiomeAnimalsAnti-Bacterial AgentsDiet, High-FatFecesFemaleMaleMiceMice, Inbred C57BLSalmonella InfectionsSalmonella typhimuriumAnti-Bacterial Agents
Identifiers
PMID
40307551What OpenQuestion holds
Textmetadata
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.