Evidence map›Paper›PMID 40305047›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Nonproteolytic ubiquitination regulates chromatin occupancy by the NCoR/SMRT/HDAC3 corepressor complex in MCF-7 breast cancer cells.

Giulio Ferrero, Maria Dafne Cardamone, Francesca Luca, Eliot Bourk, Laura Ricci, Wen Liu, Yuan Gao, Giulia Burrone, Akhirah Muhammad, Stefanie Chan and 7 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Giulio FerreroDepartment of Clinical and Biological Science, University of Torino, Orbassano (Torino) 10043, Italy.
Maria Dafne CardamoneDepartment of Biochemistry and Cell Biology, Chobanian and Avedisian School of Medicine, Boston University, Boston, MA 02118.
Francesca LucaDepartment of Clinical and Biological Science, University of Torino, Orbassano (Torino) 10043, Italy.
Eliot BourkDepartment of Medicine, School of Medicine, University of California San Diego, La Jolla, CA 92037.
Laura RicciDepartment of Clinical and Biological Science, University of Torino, Orbassano (Torino) 10043, Italy.
Wen LiuDepartment of Medicine, School of Medicine, University of California San Diego, La Jolla, CA 92037.ORCID 0000-0003-3434-4162
Yuan GaoDepartment of Biochemistry and Cell Biology, Chobanian and Avedisian School of Medicine, Boston University, Boston, MA 02118.
Giulia BurroneDepartment of Clinical and Biological Science, University of Torino, Orbassano (Torino) 10043, Italy.
Akhirah MuhammadDepartment of Biochemistry and Cell Biology, Chobanian and Avedisian School of Medicine, Boston University, Boston, MA 02118.
Stefanie ChanDepartment of Biochemistry and Cell Biology, Chobanian and Avedisian School of Medicine, Boston University, Boston, MA 02118.
Emma SmithDepartment of Biochemistry and Cell Biology, Chobanian and Avedisian School of Medicine, Boston University, Boston, MA 02118.
Ting-Yu Claire FanDepartment of Biochemistry and Cell Biology, Chobanian and Avedisian School of Medicine, Boston University, Boston, MA 02118.
Santina CutrupiDepartment of Clinical and Biological Science, University of Torino, Orbassano (Torino) 10043, Italy.
Ivan Garcia-BassetsDepartment of Medicine, School of Medicine, University of California San Diego, La Jolla, CA 92037.
Michele De BortoliDepartment of Clinical and Biological Science, University of Torino, Orbassano (Torino) 10043, Italy.
Michael G RosenfeldDepartment of Medicine, School of Medicine, University of California San Diego, La Jolla, CA 92037.ORCID 0000-0002-1572-156X
Valentina PerissiDepartment of Biochemistry and Cell Biology, Chobanian and Avedisian School of Medicine, Boston University, Boston, MA 02118.

Funding

REGULATION OF NEUROENDOCRINE SWITCHING EVENTSR37DK039949 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ROSENFELD, MICHAEL G · 1987 to 2020
$12.3M
Multiplexed Single Nucleus RNA and ATAC-seq Sequencing and Cortical Organoids: Transformative Insights into Down SyndromeR01AG070154 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MOBLEY, WILLIAM C, ROSENFELD, MICHAEL G · 2020 to 2020
$5.0M
MOLECULAR BIOLOGICAL APPROACHES TO ENDOCRINOLOGYT32DK007541 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GAULTON, KYLE JEFFRIE, MAJITHIA, AMIT · 1987 to 2022
$4.5M
REGULATION OF NEUROENDOCRINE SWITCHING EVENTSR01DK039949 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ROSENFELD, MICHAEL G · 1996 to 2024
$2.4M
Viral IncRNAs Regulate Host Genomic Transcriptional Programs Associated with Sporadic Alzheimer's DiseaseR01AG074307 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MICHAEL G ROSENFELD · 2022 to 2026
$2.0M
Regulation of mitochondrial homeostasis through retrograde signalingR01GM127625 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI PERISSI, VALENTINA · 2018 to 2021
$1.8M
Coordination of PAR and Ub signaling in mitochondriaR35GM149339 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI VALENTINA PERISSI · 2023 to 2026
$1.8M
HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) DK007541HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) DK039949HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM127625HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM149339HHS | NIH | National Institute on Aging (NIA) AG070154NIA NIH HHS R01 AG070154NIA NIH HHS R01 AG074307NIDDK NIH HHS R01 DK039949NIDDK NIH HHS R37 DK039949NIDDK NIH HHS T32 DK007541NIGMS NIH HHS R01 GM127625NIGMS NIH HHS R35 GM149339
6 · The paper itself

Abstract

Tight regulation of gene expression is achieved through the coordinated action of transcription factors and cofactors that often can act as both repressors and activators in response to regulatory signals, with their activity modulated by context-specific signal transduction pathways that also impinge on their transient and cyclical recruitment to chromatin. However, the mechanisms underlying the intricate interplay between the regulatory strategies controlling cofactors' activity and localization across subcellar domains remain poorly understood. Here, we investigated the role of G-Protein Pathway Suppressor 2 (GPS2), a transcriptional cofactor critical for maintaining cellular homeostasis via regulation of mitochondrial biogenesis, stress response, lipid metabolism, insulin signaling, and inflammation, in MCF-7 breast cancer cells. By integration of biochemical assays with genome-wide RNA sequencing and Chromatin immunoprecipitation-Seq analyses, we show that nuclear GPS2 is required for licensing histone deacetylase 3 recruitment to chromatin via restricted ubiquitination by tumor necrosis factor receptor-associated factor 6 (TRAF6), an E3 ubiquitin ligase previously shown to regulate the switch from repressive to activating functions of the nuclear receptor corepressor (NCoR)/silencing mediator of retinoic acid and thyroid hormone receptor (SMRT) complex and here unexpectedly found to translocate to the nucleus in response to IL-1β stimulation. Nuclear TRAF6 is recruited to chromatin via direct interaction with the corepressors NCoR/SMRT, and TRAF6-mediated ubiquitination of TGF-beta activated kinase 1 (MAP3K7) binding protein 2 (TAB2), a facultative component of the NCoR/SMRT complex, contributes to corepressor clearance from target regulatory regions. Together, these results reveal an exquisite mechanism for coordinating the local regulation of cofactor activity with proinflammatory signaling pathways.

Indexed as

Breast NeoplasmsChromatinHistone DeacetylasesNuclear Receptor Co-Repressor 1Nuclear Receptor Co-Repressor 2UbiquitinationFemaleHistone Deacetylase 3HumansIntracellular Signaling Peptides and ProteinsMCF-7 CellsSignal TransductionChromatinGPS2 protein, humanHistone Deacetylase 3Histone DeacetylasesIntracellular Signaling Peptides and ProteinsNCOR1 protein, humanNCOR2 protein, humanNuclear Receptor Co-Repressor 1Nuclear Receptor Co-Repressor 2breast cancercorepressortranscriptionubiquitin

Identifiers

PMID40305047
PMCPMC12067245

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.