Evidence map›Paper›PMID 40304904›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

Isolation of the Surfaceome from Primary Human Epidermal Melanocytes Using Glycocapture and Shotgun Proteomics.

Tibor Hajdú, Minh Ngoc Nguyen, Emese Zsigrai, Clare Coveney, David J Boocock, Csaba Matta

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tibor HajdúDepartment of Anatomy, Histology and Embryology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary.
Minh Ngoc NguyenDepartment of Anatomy, Histology and Embryology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary.
Emese ZsigraiDepartment of Pediatrics, Faculty of Medicine, University of Debrecen, Debrecen, Hungary.
Clare CoveneyJohn van Geest Cancer Research Centre, Nottingham Trent University, Nottingham, UK.
David J BoocockJohn van Geest Cancer Research Centre, Nottingham Trent University, Nottingham, UK.
Csaba MattaDepartment of Anatomy, Histology and Embryology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary. matta.csaba@med.unideb.hu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Melanocytes play a crucial role in skin pigmentation and protection against UV radiation. Understanding the molecular mechanisms regulating melanocyte function is essential for elucidating skin pigmentation disorders and melanoma progression. This protocol details a comprehensive methodology for characterizing the cell surface subproteome of melanocytes and melanoma cell lines, utilizing aminooxy biotinylation followed by mass spectrometry analysis. The initial step involves selectively labeling cell surface proteins with aminooxy biotin on live melanocytes and melanoma cell lines to specifically tag glycoproteins. Labeled proteins are then captured on NeutrAvidin beads. Following multiple wash steps to minimize contamination with non-cell surface proteins, mass spectrometry is employed for quantitative and qualitative analysis of the enriched subproteome, facilitating the identification and characterization of surface proteins. This is a sensitive method for profiling the cell surface subproteome in melanocytes and melanoma cell lines in vitro, offering deeper insights into their molecular composition. This protocol holds promise for advancing our understanding of melanoma and may aid in identifying potential therapeutic targets for melanoma treatment.

Indexed as

MelanocytesMembrane ProteinsProteomeProteomicsBiotinylationCell Line, TumorHumansMass SpectrometryMelanomaMembrane ProteinsProteomeAminooxy biotinBiomarkerGlycocaptureMelanocyteMelanomaSurfaceome

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.