Evidence map›Paper›PMID 40304183›Full record

ArticleNucleic acids research2025

Histone tetrasome dynamics affects chromatin transcription.

Xiangyan Shi, Anastasiia S Fedulova, Elena Y Kotova, Natalya V Maluchenko, Grigoriy A Armeev, Qinming Chen, Chinmayi Prasanna, Anastasia L Sivkina, Alexey V Feofanov, Mikhail P Kirpichnikov and 3 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Xiangyan ShiDepartment of Biology, Shenzhen MSU-BIT University, No. 1, International University Park Road, Longgang District, Shenzhen, Guangdong Province 518172, China.
Anastasiia S FedulovaSchool of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.
Elena Y KotovaNuclear Dynamics and Cancer Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, United States.
Natalya V MaluchenkoSchool of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.
Grigoriy A ArmeevSchool of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.
Qinming ChenSchool of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore.
Chinmayi PrasannaSchool of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore.
Anastasia L SivkinaSchool of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.
Alexey V FeofanovSchool of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.
Mikhail P KirpichnikovSchool of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.
Lars NordensköldSchool of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore.ORCID 0000-0002-3681-209X
Alexey K ShaytanSchool of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.ORCID 0000-0003-0312-938X
Vasily M StuditskySchool of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.ORCID 0000-0002-7389-7993

Funding

Small-molecule exploitation of ZBP1-driven nuclear necroptosis for cancer immunotherapyR01CA269975 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI SIDDHARTH BALACHANDRAN, VASILY M STUDITSKY · 2023 to 2026
$3.0M
Department of Science and Technology of Guangdong Province 2021QN02Y103Ministry of Education - Singapore MOE2018-T2-1-112National Natural Science Foundation of China 32201006NCI NIH HHS R01 CA269975NIH HHS R01CA269975Russian Science Foundation 19-74-30003
6 · The paper itself

Abstract

During various DNA-centered processes in the cell nucleus, the minimal structural units of chromatin organization, nucleosomes, are often transiently converted to hexasomes and tetrasomes missing one or both H2A/H2B histone dimers, respectively. However, the structural and functional properties of the subnucleosomes and their impact on biological processes in the nuclei are poorly understood. Here, using biochemical approaches, molecular dynamics simulations, single-particle Förster resonance energy transfer microscopy, and nuclear magnetic resonance spectroscopy, we have shown that, surprisingly, removal of both dimers from a nucleosome results in much higher mobility of both histones and DNA in the tetrasome. Accordingly, DNase I footprinting shows that DNA-histone interactions in tetrasomes are greatly compromised, resulting in formation of a much lower barrier to transcribing RNA polymerase II than nucleosomes. The data suggest that tetrasomes are remarkably dynamic structures and their formation can strongly affect various biological processes.

Indexed as

ChromatinHistonesNucleosomesTranscription, GeneticAnimalsDNAFluorescence Resonance Energy TransferHumansMolecular Dynamics SimulationRNA Polymerase IIChromatinDNAHistonesNucleosomesRNA Polymerase II

Identifiers

PMID40304183
PMCPMC12041859

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.