Evidence map›Paper›PMID 40303767›Full record

ArticleTransboundary and emerging diseases2023

Investigating the Genetic Evolution of PCV2 and PCV3 across Six Swine Herds in China from 2020 to 2021.

Chenchen Cui, Menghang Wang, Qianru Zhang, Shujie Wang, Hongliang Zhang, Zhijun Tian, Tongqing An, Xuehui Cai, Gang Wang

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Chenchen CuiHeilongjiang Research Center for Veterinary Biopharmaceutical Technology, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.
Menghang WangHeilongjiang Research Center for Veterinary Biopharmaceutical Technology, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.ORCID https://orcid.org/0000-0002-0776-5917
Qianru ZhangHeilongjiang Research Center for Veterinary Biopharmaceutical Technology, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.
Shujie WangHeilongjiang Research Center for Veterinary Biopharmaceutical Technology, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.
Hongliang ZhangHeilongjiang Research Center for Veterinary Biopharmaceutical Technology, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.ORCID https://orcid.org/0000-0003-0705-6800
Zhijun TianHeilongjiang Research Center for Veterinary Biopharmaceutical Technology, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.
Tongqing AnHeilongjiang Research Center for Veterinary Biopharmaceutical Technology, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.
Xuehui CaiHeilongjiang Research Center for Veterinary Biopharmaceutical Technology, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.ORCID https://orcid.org/0000-0001-9098-7782
Gang WangHeilongjiang Research Center for Veterinary Biopharmaceutical Technology, State Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.ORCID https://orcid.org/0009-0000-2106-9363

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To elucidate the prevalence, molecular evolution, and coinfection of PCV2 and PCV3 in China, we collected samples from six large-scale swine herds located in Heilongjiang, Henan, Hebei, and Hubei provinces and Xinjiang Uygur autonomous region from 2020 to 2021. Overall, 1,201 samples were analyzed and sequenced by PCR to identify the dominant genotypes of PCV2 and PCV3, and genetic variations in the capsid protein genes of PCV2 and PCV3 were evaluated. The major epidemic genotypes of PCV2 and PCV3 were different across different regions. The infection rate of PCV2 and PCV3 was 72.1% and 26.3%, respectively, and the coinfection rate was 18.6%. PCV2d was the dominant genotype across all herds. The PCV2d-positive rate in PCV2-positive samples was 93.5%-100% in five out of six herds, indicative of its predominance. PCV3 prevalence in China widely varied, and no dominant genotype was identified. Four, 21, 11, and 11 strains with PCV2a, PCV2d, PCV3a, and PCV3c genotypes were detected, respectively, with the capsid protein containing four, five, eight, and three aa sites with mutations, respectively. Overall, our findings revealed the dominant epidemic genotypes of PCV2 and PCV3 in six herds across five provinces in China, in addition to the main aa sites with mutations in the capsid protein. We believe that these results will facilitate the diagnosis, prevention, and control of PCV2 and PCV3 in China.

Indexed as

Circoviridae InfectionsCircovirusEvolution, MolecularSwine DiseasesAnimalsCapsid ProteinsChinaGenetic VariationGenotypePhylogenyPrevalenceSwineCapsid Proteins

Identifiers

PMID40303767
PMCPMC12016909

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.