Evidence map›Paper›PMID 40303710›Full record

ArticleTransboundary and emerging diseases2023

Insights into the Epidemiology, Phylodynamics, and Evolutionary Changes of Lineage GI-7 Infectious Bronchitis Virus.

Libin Chen, Weiwei Jiang, Wanyan Wu, Siyuan Zhang, Juncheng Cai, Ting Lv, Bin Xiang, Qiuyan Lin, Ming Liao, Chan Ding and 1 more

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Avian infectious bronchitis virus (AIBV) review by continent.Frontiers in cellular and infection microbiology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Libin ChenCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Weiwei JiangCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Wanyan WuCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Siyuan ZhangGuangzhou South China Biological Medicine Co., Ltd., Guangzhou 510642, China.
Juncheng CaiCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Ting LvCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Bin XiangCollege of Veterinary Medicine, Yunnan Agricultural University, Kunming 650201, China.
Qiuyan LinCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Ming LiaoKey Laboratory for Prevention and Control of Avian Influenza and Other Major Poultry Diseases, Ministry of Agriculture and Rural Affairs, Guangzhou 510642, China.ORCID https://orcid.org/0000-0001-8731-4528
Chan DingShanghai Veterinary Research Institute (SHVRI), Chinese Academy of Agricultural Sciences (CAAS), Shanghai 200241, China.
Tao RenCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.ORCID https://orcid.org/0000-0002-5213-8736

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infectious bronchitis virus (IBV) is distributed worldwide and causes significant losses in the poultry industry. In recent decades, lineages GI-19 and GI-7 have become the most prevalent IBV strains in China. However, the molecular evolution and phylodynamics of the lineage GI-7 IBV strains remain largely unknown. In this study, we identified 19 IBV strains from clinical samples from January 2021 to June 2022 in China, including 12 strains of GI-19, 3 strains of GI-7, and 1 strain each of GI-1, GI-9, GI-13, and GI-28. These results indicated that lineages GI-19 and GI-7 IBVs are still the most prevalent IBVs in China. Here, we investigated the evolution and transmission dynamics of lineage GI-7 IBVs. Our results revealed that the Taiwan province might be the origin of lineage GI-7 IBVs and that South China plays an important role in the spread of IBV. Furthermore, we found low codon usage bias of the S1 gene in lineage GI-7 IBVs. This allowed IBV to replicate in the host during evolution as a result of reduced competition, mainly driven by natural selection and mutational pressure, where the role of natural selection is more prominent. Collectively, our results reveal the genetic diversity and evolutionary dynamics of lineage GI-7 IBVs, which could assist in the prevention and control of viral infection.

Indexed as

Coronavirus InfectionsEvolution, MolecularInfectious bronchitis virusPoultry DiseasesAnimalsChickensChinaPhylogeny

Identifiers

PMID40303710
PMCPMC12016960

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.